|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/multiqc/multiqc_plots
|
Jan 26, 2026 5:00 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/multiqc/multiqc_data
|
Jan 26, 2026 5:00 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/preprocessing/recalibrated/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.bam
|
Jan 26, 2026 4:59 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/multiqc/multiqc_report.html
|
Jan 26, 2026 4:59 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/preprocessing/recalibrated/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.bam.bai
|
Jan 26, 2026 4:56 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/postdedup_qc.json
|
Jan 26, 2026 4:29 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/qc_markdup/picard/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_footprint.CollectHsMetrics.coverage_metrics
|
Jan 26, 2026 4:28 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/samtools/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.cram.stats
|
Jan 26, 2026 4:14 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.per-base.bed.gz
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.mosdepth.global.dist.txt
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.per-base.bed.gz.csi
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.regions.bed.gz
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.regions.bed.gz.csi
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.mosdepth.region.dist.txt
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/raw_qc/mosdepth/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.mosdepth.summary.txt
|
Jan 26, 2026 3:24 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/sentieon/bqsr/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.table.post
|
Jan 26, 2026 2:58 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/sentieon/bqsr/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.csv
|
Jan 26, 2026 2:58 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/reports/sentieon/bqsr/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.pdf
|
Jan 26, 2026 2:58 PM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/preprocessing/recal_table/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.recal.table
|
Jan 26, 2026 10:16 AM |
|
|
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/bqsr_optimization_test/2026-01-26_16-21-03z/preprocessing/sentieon_dedup/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46/p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46.dedup.bam
|
Jan 26, 2026 9:09 AM |