succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 5m 5s 10s 4m 37s 18s 387.0 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 14s 10s - - 5.4 MB 101% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 12s 10s - - 6.2 MB 113% 6.0 MB 1.7 MB 612.0 KB 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 12s 10s - - 6.1 MB 118% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 12s 10s - - 6.1 MB 108% 2.1 MB 595.2 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 12s 11s - - 3.2 MB 119% 351.0 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 11s 10s 1s 0s 6.1 MB 113% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 13s 11s 0s 1s 0 bytes 115% 74.8 KB 645 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 16s 14s 0s 1s 16.6 MB 102% 3.1 MB 2.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 17s 14s 0s 2s 18.8 MB 100% 2.9 MB 13.6 KB 0 bytes 20.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR_SENTIEON:SAMTOOLS_INDEX (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 6m 0s 2s 26s 5m 32s 13.8 MB 99% 120.5 GB 3.5 MB 120.5 GB 3.6 MB 4
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR_SENTIEON:SENTIEON_QUALCAL (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 4h 41m 11s 4h 32m 8m 41s 8.5 GB 605% 183.4 GB 241.0 GB 61.7 GB 241.1 GB 2
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR_SENTIEON:SENTIEON_QUALCAL (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 1h 13m 42s 1h 7m 4m 54s 5.5 GB 594% 60.0 GB 377.2 KB 39.3 GB 156.0 KB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 3h 55m 14s 3h 46m 8m 18s 1.8 GB 102% 94.6 GB 16.2 MB 94.7 GB 15.8 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 4h 24m 20s 4h 17m 6m 40s 1.9 GB 102% 94.6 GB 16.3 MB 94.7 GB 16.0 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 6h 28m 16s 6h 20m 7m 38s 1.7 GB 102% 94.7 GB 21.2 MB 96.5 GB 21.0 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 7h 7m 18s 7h 0m 6m 25s 1.8 GB 102% 94.7 GB 21.3 MB 96.5 GB 21.0 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 7h 20m 31s 7h 15m 4m 41s 2.2 GB 102% 94.7 GB 23.0 MB 96.4 GB 22.6 MB 4
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 6h 14m 11s 6h 7m 7m 35s 1.7 GB 102% 94.7 GB 21.0 MB 96.4 GB 20.6 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 4h 20m 17s 4h 11m 8m 49s 1.7 GB 102% 94.6 GB 16.3 MB 94.7 GB 15.9 MB 2
58 items found |
1 2 3