NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-bqsr-optimization-test-2026-01-26_16-21-03z - Workflow Tracker

Runs
mipeters-bqs..6_16-21-03z
Tasks
PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

Login

Task Info

Status: succeeded
Hash: 23a5ca88a574
Process: NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 2

Attempt 2

Execution

Status: succeeded - cached
Hash: 86/724ca0
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/724ca07e43236667f03d668b55f506
Native ID: nf-86724ca07e43236667f03d668b55f506-1639e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 1.7 GB / 12.0 GB
Process I/O (rchar / wchar): 94.6 GB / 16.3 MB
Disk I/O (read / write): 94.7 GB / 15.9 MB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:48:19 AM
Completed: Jan 24, 2026 10:09:12 AM
Total Duration: 4h 20m

Phases

Queue: 17s
Execution: 4h 11m
Stage/Unstage: 8m 49s

Attempt 1

Execution

Status: failed
Hash: 9d/9cf25e
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/9cf25e75a65f1b6cbb52dabe2745a2
Native ID: nf-9d9cf25e75a65f1b6cbb52dabe2745a2-badd8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:43:01 AM
Completed: Jan 24, 2026 5:48:14 AM
Total Duration: 5m 12s

Phases

Queue: 27s
Execution: 4m 45s
Stage/Unstage: 0s