NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-bqsr-optimization-test-2026-01-26_16-21-03z - Workflow Tracker

Runs
mipeters-bqs..6_16-21-03z
Tasks
PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: 800930d5a343
Process: NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: bb/360b0e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/360b0e6cbffaf002998ff039f2479d
Native ID: nf-bb360b0e6cbffaf002998ff039f2479d-d9421

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 2.2 GB / 12.0 GB
Process I/O (rchar / wchar): 94.7 GB / 23.0 MB
Disk I/O (read / write): 96.4 GB / 22.6 MB
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 9:07:56 AM
Completed: Jan 26, 2026 4:28:42 PM
Total Duration: 7h 20m

Phases

Queue: 31s
Execution: 7h 15m
Stage/Unstage: 4m 41s

Attempt 3

Execution

Status: failed
Hash: e4/acde21
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e4/acde2189968b6d6630af00ba716b2b
Native ID: nf-e4acde2189968b6d6630af00ba716b2b-e3289

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0dd8cc94239734393 ( on-demand)

Runtime

Submitted: Jan 26, 2026 9:03:25 AM
Completed: Jan 26, 2026 9:07:47 AM
Total Duration: 4m 21s

Phases

Queue: 27s
Execution: 3m 54s
Stage/Unstage: 0s

Attempt 2

Execution

Status: aborted
Hash: 0b/175096
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/17509611809d821333f6f9bd01bbaf
Native ID: nf-0b17509611809d821333f6f9bd01bbaf-2dcd6

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 2.7 GB / 12.0 GB
Process I/O (rchar / wchar): 94.7 GB / 23.0 MB
Disk I/O (read / write): 96.4 GB / 22.6 MB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:50:19 AM
Completed: Jan 24, 2026 1:24:53 PM
Total Duration: 7h 34m

Phases

Queue: 18s
Execution: 7h 27m
Stage/Unstage: 7m 11s

Attempt 1

Execution

Status: failed
Hash: 28/4708bb
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/4708bb5e0dd51495b2e305e8249783
Native ID: nf-284708bb5e0dd51495b2e305e8249783-934a7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:43:01 AM
Completed: Jan 24, 2026 5:50:19 AM
Total Duration: 7m 17s

Phases

Queue: 7m 17s
Execution: -
Stage/Unstage: -