NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-bqsr-optimization-test-2026-01-26_16-21-03z - Workflow Tracker

Runs
mipeters-bqs..6_16-21-03z
Tasks
PICARD_COLLECTHSMETRICS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: c7b003e35342
Process: NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 2

Attempt 2

Execution

Status: succeeded - cached
Hash: d2/3aac9e
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d2/3aac9ecc7384e0c1d0eadc59cf0fc9
Native ID: nf-d23aac9ecc7384e0c1d0eadc59cf0fc9-389bf

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 1
Memory (peak / alloc): 1.8 GB / 12.0 GB
Process I/O (rchar / wchar): 94.6 GB / 16.2 MB
Disk I/O (read / write): 94.7 GB / 15.8 MB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:47:59 AM
Completed: Jan 24, 2026 9:43:01 AM
Total Duration: 3h 55m

Phases

Queue: 14s
Execution: 3h 46m
Stage/Unstage: 8m 18s

Attempt 1

Execution

Status: failed
Hash: 21/a50868
Exit Code: 137
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/picard:3.3.0--hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/a508689788bf530ac46e620cc5a661
Native ID: nf-21a508689788bf530ac46e620cc5a661-20bb7

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 1
Memory (peak / alloc): - / 6.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 24, 2026 5:43:00 AM
Completed: Jan 24, 2026 5:47:59 AM
Total Duration: 4m 58s

Phases

Queue: 38s
Execution: 4m 19s
Stage/Unstage: 0s