File Info

Filename
HCC1395_BL-lane_1.fastp.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/fastp/HCC1395_BL/HCC1395_BL-lane_1.fastp.log
Size
1.2 KB
Workflow Run
mipeters-regression-dev-698115e9
Published
Feb 02, 2026 1:28 PM

Content

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Read1 before filtering:
total reads: 976707
total bases: 146506050
Q20 bases: 143831432(98.1744%)
Q30 bases: 138654698(94.6409%)

Read2 before filtering:
total reads: 976707
total bases: 146506050
Q20 bases: 143130474(97.6959%)
Q30 bases: 136823122(93.3908%)

Read1 after filtering:
total reads: 976707
total bases: 146506050
Q20 bases: 143831432(98.1744%)
Q30 bases: 138654698(94.6409%)

Read2 after filtering:
total reads: 976707
total bases: 146506050
Q20 bases: 143130474(97.6959%)
Q30 bases: 136823122(93.3908%)

Filtering result:
reads passed filter: 1953414
reads failed due to low quality: 0
reads failed due to too many N: 0
reads failed due to too short: 0

Duplication rate: 8.95745%

Insert size peak (evaluated by paired-end reads): 175

JSON report: HCC1395_BL-lane_1.fastp.json
HTML report: HCC1395_BL-lane_1.fastp.html

fastp --in1 HCC1395_BL-lane_1_1.fastq.gz --in2 HCC1395_BL-lane_1_2.fastq.gz --out1 HCC1395_BL-lane_1_1.fastp.fastq.gz --out2 HCC1395_BL-lane_1_2.fastp.fastq.gz --json HCC1395_BL-lane_1.fastp.json --html HCC1395_BL-lane_1.fastp.html --thread 14 --detect_adapter_for_pe --disable_adapter_trimming --split_by_lines 200000000 --length_required 15 
fastp v0.23.4, time used: 3 seconds