File Info

Filename
HCC1395_tumor-lane_1.fastp.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/fastp/HCC1395_tumor/HCC1395_tumor-lane_1.fastp.log
Size
1.2 KB
Workflow Run
mipeters-regression-dev-698115e9
Published
Feb 02, 2026 1:28 PM

Content

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Read1 before filtering:
total reads: 2674705
total bases: 401205750
Q20 bases: 393871583(98.172%)
Q30 bases: 380399905(94.8142%)

Read2 before filtering:
total reads: 2674705
total bases: 401205750
Q20 bases: 392481093(97.8254%)
Q30 bases: 376181832(93.7628%)

Read1 after filtering:
total reads: 2674705
total bases: 401205750
Q20 bases: 393871583(98.172%)
Q30 bases: 380399905(94.8142%)

Read2 after filtering:
total reads: 2674705
total bases: 401205750
Q20 bases: 392481093(97.8254%)
Q30 bases: 376181832(93.7628%)

Filtering result:
reads passed filter: 5349410
reads failed due to low quality: 0
reads failed due to too many N: 0
reads failed due to too short: 0

Duplication rate: 18.153%

Insert size peak (evaluated by paired-end reads): 190

JSON report: HCC1395_tumor-lane_1.fastp.json
HTML report: HCC1395_tumor-lane_1.fastp.html

fastp --in1 HCC1395_tumor-lane_1_1.fastq.gz --in2 HCC1395_tumor-lane_1_2.fastq.gz --out1 HCC1395_tumor-lane_1_1.fastp.fastq.gz --out2 HCC1395_tumor-lane_1_2.fastp.fastq.gz --json HCC1395_tumor-lane_1.fastp.json --html HCC1395_tumor-lane_1.fastp.html --thread 14 --detect_adapter_for_pe --disable_adapter_trimming --split_by_lines 200000000 --length_required 15 
fastp v0.23.4, time used: 4 seconds