File Info

Filename
Sig_18_tissue-lane_1.fastp.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/fastp/Sig_18_tissue/Sig_18_tissue-lane_1.fastp.log
Size
1.2 KB
Workflow Run
mipeters-regression-dev-698115e9
Published
Feb 02, 2026 1:28 PM

Content

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Read1 before filtering:
total reads: 6155086
total bases: 923262900
Q20 bases: 905333906(98.0581%)
Q30 bases: 875300453(94.8051%)

Read2 before filtering:
total reads: 6155086
total bases: 923262900
Q20 bases: 905650357(98.0924%)
Q30 bases: 874323445(94.6993%)

Read1 after filtering:
total reads: 6155086
total bases: 923262900
Q20 bases: 905333906(98.0581%)
Q30 bases: 875300453(94.8051%)

Read2 after filtering:
total reads: 6155086
total bases: 923262900
Q20 bases: 905650357(98.0924%)
Q30 bases: 874323445(94.6993%)

Filtering result:
reads passed filter: 12310172
reads failed due to low quality: 0
reads failed due to too many N: 0
reads failed due to too short: 0

Duplication rate: 15.073%

Insert size peak (evaluated by paired-end reads): 179

JSON report: Sig_18_tissue-lane_1.fastp.json
HTML report: Sig_18_tissue-lane_1.fastp.html

fastp --in1 Sig_18_tissue-lane_1_1.fastq.gz --in2 Sig_18_tissue-lane_1_2.fastq.gz --out1 Sig_18_tissue-lane_1_1.fastp.fastq.gz --out2 Sig_18_tissue-lane_1_2.fastp.fastq.gz --json Sig_18_tissue-lane_1.fastp.json --html Sig_18_tissue-lane_1.fastp.html --thread 14 --detect_adapter_for_pe --disable_adapter_trimming --split_by_lines 200000000 --length_required 15 
fastp v0.23.4, time used: 9 seconds