File Info
- Filename
- HCC1395_BL.dedup.cram.metrics.multiqc.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/sentieon_dedup/HCC1395_BL/HCC1395_BL.dedup.cram.metrics.multiqc.tsv
- Size
- 822 bytes
- Workflow Run
- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:33 PM
Content
View in new tab| #SentieonCommandLine: | /opt/conda/share/sentieon-202308.03-3/libexec/driver | -t | 6 | -i | HCC1395_BL.0008.bam | -i | HCC1395_BL.0003.bam | -i | HCC1395_BL.0005.bam | -i | HCC1395_BL.0010.bam | -i | HCC1395_BL.0012.bam | -i | HCC1395_BL.0001.bam | -i | HCC1395_BL.0006.bam | -i | HCC1395_BL.0014.bam | -i | HCC1395_BL.0002.bam | -i | HCC1395_BL.0004.bam | -i | HCC1395_BL.0011.bam | -i | HCC1395_BL.0009.bam | -i | HCC1395_BL.0007.bam | -i | HCC1395_BL.0013.bam | -r | Homo_sapiens_assembly38.fasta | --algo | Dedup | --score_info | HCC1395_BL.dedup.score | --metrics | HCC1395_BL.dedup.cram.metrics | HCC1395_BL.dedup.bam |
| LIBRARY | UNPAIRED_READS_EXAMINED | READ_PAIRS_EXAMINED | SECONDARY_OR_SUPPLEMENTARY_RDS | UNMAPPED_READS | UNPAIRED_READ_DUPLICATES | READ_PAIR_DUPLICATES | READ_PAIR_OPTICAL_DUPLICATES | PERCENT_DUPLICATION | ESTIMATED_LIBRARY_SIZE | |||||||||||||||||||||||||||||||
| HCC1395_BL | 15 | 976692 | 2390 | 15 | 9 | 198550 | 58874 | 0.203291 | 2701113 |
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