HCC1395_BL_basic_stats.tsv - Workflow Tracker

Filename: HCC1395_BL_basic_stats.tsv
Full Path: s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/qc_markdup/seqtools/HCC1395_BL/HCC1395_BL_basic_stats.tsv
Size: 1.3 KB
Workflow Run: mipeters-regression-dev-698115e9
Published: Feb 02, 2026 1:34 PM

name	reads	unmapped	frac_unmapped	unique_reads	frac_dupes	pairs	frac_reads_on_target	frac_reads_off_target	frac_pairs_on_target	frac_pairs_off_target	frag_size_q20	frag_size_median	frag_size_q80	proper_pairs	frac_proper_pairs	pairs_on_target	pairs_off_target	reads_on_target	reads_off_target	frag_size_mean	frag_size_std	dupes	n_q20	n_q25	n_q30	n_bases	bed	saturation_at_1000000_reads	gc_0.0	gc_0.05	gc_0.1	gc_0.15	gc_0.2	gc_0.25	gc_0.3	gc_0.35	gc_0.4	gc_0.45	gc_0.5	gc_0.55	gc_0.6	gc_0.65	gc_0.7	gc_0.75	gc_0.8	gc_0.85	gc_0.9	gc_0.95	gc_1.0	min_depth	mean_depth	cv_depth	max_depth	q1_depth	q5_depth	q50_depth	q95_depth	q99_depth	lt100x	lt700x	n_bases_gt30x	n_bases_gt100x	frac_bases_gt30x	frac_bases_gt100x	roi_size	contam	n_sites	loglik	lrt	bed_base_count
HCC1395_BL.dedup	1953414	15	8e-06	1556305	0.20329	778142	0.663535	0.336455	0.766764	0.233236	163	274	427	777543	0.99923	596192	181351	1032663	523627	301.233977	123.593147	397109	0.979353	0.940161	0.940161	293009850	xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed	42	0.0	0.0	0.0	0.0	0.0	0.236476	0.313723	0.390471	0.679506	1.637552	1.138358	1.360331	0.898137	0.768962	0.625521	0.765809	0.507684	0.0	0.0	0.0	0.0	0.0	202.799139	0.662744	1173.0	40.0	59.0	132.0	768.0	952.0	0.276603	0.932645	388549	282226	0.995922	0.723397	390140	0.0	76	-21.1034	-0.0046	392232

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