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HCC1395_tumor.md.mosdepth.summary.txt
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s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/qc_markdup/samtools/HCC1395_tumor/HCC1395_tumor.md.mosdepth.summary.txt
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Workflow Run
mipeters-regression-dev-698115e9
Published
Feb 02, 2026 1:34 PM

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chrom	length	bases	mean	min	max
chr1	248956422	107775	0.00	0	40
chr1_region	0	0	0.00	0	0
chr2	242193529	163574	0.00	0	430
chr2_region	0	0	0.00	0	0
chr3	198295559	52859	0.00	0	5
chr3_region	0	0	0.00	0	0
chr4	190214555	59416	0.00	0	23
chr4_region	0	0	0.00	0	0
chr5	181538259	47625	0.00	0	11
chr5_region	0	0	0.00	0	0
chr6	170805979	40559	0.00	0	10
chr6_region	0	0	0.00	0	0
chr7	159345973	302960	0.00	0	601
chr7_region	0	0	0.00	0	0
chr8	145138636	35853	0.00	0	5
chr8_region	0	0	0.00	0	0
chr9	138394717	79472	0.00	0	30
chr9_region	0	0	0.00	0	0
chr10	133797422	31014	0.00	0	19
chr10_region	0	0	0.00	0	0
chr11	135086622	33672	0.00	0	5
chr11_region	0	0	0.00	0	0
chr12	133275309	30888	0.00	0	9
chr12_region	0	0	0.00	0	0
chr13	114364328	427445	0.00	0	379
chr13_region	0	0	0.00	0	0
chr14	107043718	27741	0.00	0	37
chr14_region	0	0	0.00	0	0
chr15	101991189	55355	0.00	0	96
chr15_region	0	0	0.00	0	0
chr16	90338345	15312	0.00	0	7
chr16_region	0	0	0.00	0	0
chr17	83257441	11519	0.00	0	6
chr17_region	0	0	0.00	0	0
chr18	80373285	340647	0.00	0	149
chr18_region	0	0	0.00	0	0
chr19	58617616	11517	0.00	0	5
chr19_region	0	0	0.00	0	0
chr20	64444167	16708	0.00	0	7
chr20_region	0	0	0.00	0	0
chr21	46709983	377482974	8.08	0	6413
chr21_region	392232	173653841	442.73	0	1807
chr22	50818468	118329	0.00	0	94
chr22_region	0	0	0.00	0	0
chrX	156040895	53703	0.00	0	13
chrX_region	0	0	0.00	0	0
chrY	57227415	12841	0.00	0	9
chrY_region	0	0	0.00	0	0
chrM	16569	117	0.01	0	2
chrM_region	0	0	0.00	0	0
chr1_KI270706v1_random	175055	86884	0.50	0	223
chr1_KI270706v1_random_region	0	0	0.00	0	0
chr1_KI270707v1_random	32032	5227	0.16	0	8
chr1_KI270707v1_random_region	0	0	0.00	0	0
chr1_KI270710v1_random	40176	1106	0.03	0	2
chr1_KI270710v1_random_region	0	0	0.00	0	0
chr3_GL000221v1_random	155397	125156	0.81	0	63
chr3_GL000221v1_random_region	0	0	0.00	0	0
chr4_GL000008v2_random	209709	30719	0.15	0	66
chr4_GL000008v2_random_region	0	0	0.00	0	0
chr9_KI270719v1_random	176845	108599	0.61	0	194
chr9_KI270719v1_random_region	0	0	0.00	0	0
chr9_KI270720v1_random	39050	137	0.00	0	1
chr9_KI270720v1_random_region	0	0	0.00	0	0
chr14_GL000009v2_random	201709	189325	0.94	0	181
chr14_GL000009v2_random_region	0	0	0.00	0	0
chr14_KI270722v1_random	194050	503	0.00	0	1
chr14_KI270722v1_random_region	0	0	0.00	0	0
chr14_GL000194v1_random	191469	177412	0.93	0	130
chr14_GL000194v1_random_region	0	0	0.00	0	0
chr14_KI270723v1_random	38115	166	0.00	0	1
chr14_KI270723v1_random_region	0	0	0.00	0	0
chr14_KI270725v1_random	172810	13323	0.08	0	41
chr14_KI270725v1_random_region	0	0	0.00	0	0
chr15_KI270727v1_random	448248	17185	0.04	0	65
chr15_KI270727v1_random_region	0	0	0.00	0	0
chr16_KI270728v1_random	1872759	41	0.00	0	1
chr16_KI270728v1_random_region	0	0	0.00	0	0
chr17_GL000205v2_random	185591	50405	0.27	0	73
chr17_GL000205v2_random_region	0	0	0.00	0	0
chr17_KI270729v1_random	280839	182	0.00	0	1
chr17_KI270729v1_random_region	0	0	0.00	0	0
chr22_KI270733v1_random	179772	2194024	12.20	0	1988
chr22_KI270733v1_random_region	0	0	0.00	0	0
chr22_KI270735v1_random	42811	139	0.00	0	1
chr22_KI270735v1_random_region	0	0	0.00	0	0
chr22_KI270736v1_random	181920	100	0.00	0	1
chr22_KI270736v1_random_region	0	0	0.00	0	0
chrUn_KI270442v1	392061	214	0.00	0	1
chrUn_KI270442v1_region	0	0	0.00	0	0
chrUn_KI270435v1	92983	297	0.00	0	1
chrUn_KI270435v1_region	0	0	0.00	0	0
chrUn_KI270438v1	112505	1129	0.01	0	3
chrUn_KI270438v1_region	0	0	0.00	0	0
chrUn_KI270519v1	138126	404	0.00	0	1
chrUn_KI270519v1_region	0	0	0.00	0	0
chrUn_KI270581v1	7046	235	0.03	0	1
chrUn_KI270581v1_region	0	0	0.00	0	0
chrUn_KI270579v1	31033	2477	0.08	0	5
chrUn_KI270579v1_region	0	0	0.00	0	0
chrUn_KI270582v1	6504	3286	0.51	0	6
chrUn_KI270582v1_region	0	0	0.00	0	0
chrUn_GL000195v1	182896	448596	2.45	0	1040
chrUn_GL000195v1_region	0	0	0.00	0	0
chrUn_GL000219v1	179198	293	0.00	0	1
chrUn_GL000219v1_region	0	0	0.00	0	0
chrUn_GL000220v1	161802	2100777	12.98	0	2035
chrUn_GL000220v1_region	0	0	0.00	0	0
chrUn_GL000213v1	164239	357169	2.17	0	221
chrUn_GL000213v1_region	0	0	0.00	0	0
chrUn_KI270743v1	210658	4065	0.02	0	7
chrUn_KI270743v1_region	0	0	0.00	0	0
chrUn_KI270744v1	168472	10817	0.06	0	40
chrUn_KI270744v1_region	0	0	0.00	0	0
chrUn_KI270746v1	66486	610487	9.18	0	464
chrUn_KI270746v1_region	0	0	0.00	0	0
chrUn_KI270749v1	158759	2460	0.02	0	4
chrUn_KI270749v1_region	0	0	0.00	0	0
chrUn_KI270750v1	148850	129423	0.87	0	145
chrUn_KI270750v1_region	0	0	0.00	0	0
chrUn_KI270751v1	150742	4241	0.03	0	8
chrUn_KI270751v1_region	0	0	0.00	0	0
chrUn_KI270753v1	62944	2858	0.05	0	1
chrUn_KI270753v1_region	0	0	0.00	0	0
chrUn_KI270754v1	40191	1849	0.05	0	2
chrUn_KI270754v1_region	0	0	0.00	0	0
chrUn_GL000214v1	137718	2521	0.02	0	9
chrUn_GL000214v1_region	0	0	0.00	0	0
chrUn_KI270742v1	186739	138139	0.74	0	80
chrUn_KI270742v1_region	0	0	0.00	0	0
chrUn_GL000216v2	176608	740	0.00	0	3
chrUn_GL000216v2_region	0	0	0.00	0	0
chrUn_GL000218v1	161147	58056	0.36	0	60
chrUn_GL000218v1_region	0	0	0.00	0	0
chr2_KI270768v1_alt	110099	1288	0.01	0	5
chr2_KI270768v1_alt_region	0	0	0.00	0	0
chr2_GL383522v1_alt	123821	6781	0.05	0	35
chr2_GL383522v1_alt_region	0	0	0.00	0	0
chr3_KI270778v1_alt	248252	150	0.00	0	1
chr3_KI270778v1_alt_region	0	0	0.00	0	0
chr6_GL000250v2_alt	4672374	287	0.00	0	1
chr6_GL000250v2_alt_region	0	0	0.00	0	0
chr8_KI270822v1_alt	624492	61	0.00	0	1
chr8_KI270822v1_alt_region	0	0	0.00	0	0
chr8_KI270810v1_alt	374415	524	0.00	0	2
chr8_KI270810v1_alt_region	0	0	0.00	0	0
chr8_KI270820v1_alt	36640	202	0.01	0	3
chr8_KI270820v1_alt_region	0	0	0.00	0	0
chr9_GL383542v1_alt	60032	244	0.00	0	2
chr9_GL383542v1_alt_region	0	0	0.00	0	0
chr10_GL383546v1_alt	309802	600	0.00	0	4
chr10_GL383546v1_alt_region	0	0	0.00	0	0
chr12_GL383549v1_alt	120804	201	0.00	0	2
chr12_GL383549v1_alt_region	0	0	0.00	0	0
chr12_GL383550v2_alt	169178	585	0.00	0	4
chr12_GL383550v2_alt_region	0	0	0.00	0	0
chr12_GL383552v1_alt	138655	97	0.00	0	1
chr12_GL383552v1_alt_region	0	0	0.00	0	0
chr14_KI270845v1_alt	180703	198	0.00	0	2
chr14_KI270845v1_alt_region	0	0	0.00	0	0
chr16_KI270853v1_alt	2659700	174	0.00	0	1
chr16_KI270853v1_alt_region	0	0	0.00	0	0
chr17_KI270857v1_alt	2877074	128	0.00	0	1
chr17_KI270857v1_alt_region	0	0	0.00	0	0
chr17_JH159146v1_alt	278131	242	0.00	0	2
chr17_JH159146v1_alt_region	0	0	0.00	0	0
chr17_GL000258v2_alt	1821992	76	0.00	0	1
chr17_GL000258v2_alt_region	0	0	0.00	0	0
chr18_GL383567v1_alt	289831	300	0.00	0	1
chr18_GL383567v1_alt_region	0	0	0.00	0	0
chr19_GL383573v1_alt	385657	300	0.00	0	2
chr19_GL383573v1_alt_region	0	0	0.00	0	0
chr19_GL949746v1_alt	987716	50	0.00	0	1
chr19_GL949746v1_alt_region	0	0	0.00	0	0
chr21_GL383578v2_alt	63917	2544	0.04	0	11
chr21_GL383578v2_alt_region	0	0	0.00	0	0
chr21_KI270874v1_alt	166743	3394	0.02	0	10
chr21_KI270874v1_alt_region	0	0	0.00	0	0
chr21_KI270873v1_alt	143900	1346	0.01	0	7
chr21_KI270873v1_alt_region	0	0	0.00	0	0
chr21_GL383579v2_alt	201197	1001	0.00	0	2
chr21_GL383579v2_alt_region	0	0	0.00	0	0
chr21_GL383580v2_alt	74653	8465	0.11	0	37
chr21_GL383580v2_alt_region	0	0	0.00	0	0
chr21_GL383581v2_alt	116689	14935	0.13	0	41
chr21_GL383581v2_alt_region	0	0	0.00	0	0
chr21_KI270872v1_alt	82692	7315	0.09	0	19
chr21_KI270872v1_alt_region	0	0	0.00	0	0
chr22_KI270879v1_alt	304135	300	0.00	0	2
chr22_KI270879v1_alt_region	0	0	0.00	0	0
chr6_GL000251v2_alt	4795265	231	0.00	0	2
chr6_GL000251v2_alt_region	0	0	0.00	0	0
chr15_KI270905v1_alt	5161414	286	0.00	0	2
chr15_KI270905v1_alt_region	0	0	0.00	0	0
chr4_KI270925v1_alt	555799	5125	0.01	0	17
chr4_KI270925v1_alt_region	0	0	0.00	0	0
chr6_GL000252v2_alt	4604811	133	0.00	0	1
chr6_GL000252v2_alt_region	0	0	0.00	0	0
chr6_GL000253v2_alt	4677643	527	0.00	0	1
chr6_GL000253v2_alt_region	0	0	0.00	0	0
chr6_GL000254v2_alt	4827813	482	0.00	0	2
chr6_GL000254v2_alt_region	0	0	0.00	0	0
chr6_GL000255v2_alt	4606388	433	0.00	0	1
chr6_GL000255v2_alt_region	0	0	0.00	0	0
chr6_GL000256v2_alt	4929269	551	0.00	0	3
chr6_GL000256v2_alt_region	0	0	0.00	0	0
chr19_GL949752v1_alt	987100	260	0.00	0	4
chr19_GL949752v1_alt_region	0	0	0.00	0	0
chrUn_KN707610v1_decoy	1393	297	0.21	0	2
chrUn_KN707610v1_decoy_region	0	0	0.00	0	0
chrUn_KN707656v1_decoy	1017	589	0.58	0	4
chrUn_KN707656v1_decoy_region	0	0	0.00	0	0
chrUn_KN707657v1_decoy	1068	443	0.41	0	2
chrUn_KN707657v1_decoy_region	0	0	0.00	0	0
chrUn_KN707660v1_decoy	8410	572	0.07	0	2
chrUn_KN707660v1_decoy_region	0	0	0.00	0	0
chrUn_KN707661v1_decoy	5534	252	0.05	0	1
chrUn_KN707661v1_decoy_region	0	0	0.00	0	0
chrUn_KN707687v1_decoy	1136	1446	1.27	0	8
chrUn_KN707687v1_decoy_region	0	0	0.00	0	0
chrUn_KN707716v1_decoy	2888	340	0.12	0	4
chrUn_KN707716v1_decoy_region	0	0	0.00	0	0
chrUn_KN707740v1_decoy	10282	2100	0.20	0	14
chrUn_KN707740v1_decoy_region	0	0	0.00	0	0
chrUn_KN707765v1_decoy	6020	130	0.02	0	2
chrUn_KN707765v1_decoy_region	0	0	0.00	0	0
chrUn_KN707809v1_decoy	3667	882	0.24	0	9
chrUn_KN707809v1_decoy_region	0	0	0.00	0	0
chrUn_KN707822v1_decoy	2575	1486	0.58	0	8
chrUn_KN707822v1_decoy_region	0	0	0.00	0	0
chrUn_KN707862v1_decoy	16513	580	0.04	0	4
chrUn_KN707862v1_decoy_region	0	0	0.00	0	0
chrUn_KN707890v1_decoy	1088	1050	0.97	0	7
chrUn_KN707890v1_decoy_region	0	0	0.00	0	0
chrUn_KN707891v1_decoy	1143	4650	4.07	0	16
chrUn_KN707891v1_decoy_region	0	0	0.00	0	0
chrUn_KN707892v1_decoy	2530	900	0.36	0	2
chrUn_KN707892v1_decoy_region	0	0	0.00	0	0
chrUn_KN707896v1_decoy	33125	33994	1.03	0	26
chrUn_KN707896v1_decoy_region	0	0	0.00	0	0
chrUn_KN707903v1_decoy	6581	191	0.03	0	2
chrUn_KN707903v1_decoy_region	0	0	0.00	0	0
chrUn_KN707914v1_decoy	2055	600	0.29	0	2
chrUn_KN707914v1_decoy_region	0	0	0.00	0	0
chrUn_KN707926v1_decoy	1266	757	0.60	0	6
chrUn_KN707926v1_decoy_region	0	0	0.00	0	0
chrUn_KN707934v1_decoy	1070	430	0.40	0	2
chrUn_KN707934v1_decoy_region	0	0	0.00	0	0
chrUn_KN707950v1_decoy	1095	716	0.65	0	3
chrUn_KN707950v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000002v1_decoy	18532	186	0.01	0	2
chrUn_JTFH01000002v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000009v1_decoy	9727	300	0.03	0	2
chrUn_JTFH01000009v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000031v1_decoy	5926	16226	2.74	0	77
chrUn_JTFH01000031v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000045v1_decoy	4828	272	0.06	0	2
chrUn_JTFH01000045v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000190v1_decoy	2691	297	0.11	0	2
chrUn_JTFH01000190v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000200v1_decoy	2632	1794	0.68	0	10
chrUn_JTFH01000200v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000236v1_decoy	2459	300	0.12	0	2
chrUn_JTFH01000236v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000339v1_decoy	1996	600	0.30	0	2
chrUn_JTFH01000339v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000360v1_decoy	1924	450	0.23	0	1
chrUn_JTFH01000360v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000518v1_decoy	1536	261	0.17	0	2
chrUn_JTFH01000518v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000534v1_decoy	1505	130	0.09	0	1
chrUn_JTFH01000534v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000596v1_decoy	1402	1080	0.77	0	8
chrUn_JTFH01000596v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000612v1_decoy	1379	300	0.22	0	2
chrUn_JTFH01000612v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000623v1_decoy	1363	224	0.16	0	2
chrUn_JTFH01000623v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000734v1_decoy	1214	179	0.15	0	2
chrUn_JTFH01000734v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000784v1_decoy	1167	112	0.10	0	2
chrUn_JTFH01000784v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000827v1_decoy	1116	594	0.53	0	4
chrUn_JTFH01000827v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000834v1_decoy	1110	924	0.83	0	8
chrUn_JTFH01000834v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000864v1_decoy	1083	10697	9.88	0	24
chrUn_JTFH01000864v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000865v1_decoy	1082	150	0.14	0	1
chrUn_JTFH01000865v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000961v1_decoy	1000	600	0.60	0	4
chrUn_JTFH01000961v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01000979v1_decoy	3192	129	0.04	0	1
chrUn_JTFH01000979v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001257v1_decoy	17929	210	0.01	0	2
chrUn_JTFH01001257v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001259v1_decoy	8053	300	0.04	0	2
chrUn_JTFH01001259v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001319v1_decoy	2337	293	0.13	0	2
chrUn_JTFH01001319v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001390v1_decoy	1729	150	0.09	0	1
chrUn_JTFH01001390v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001441v1_decoy	1554	844	0.54	0	4
chrUn_JTFH01001441v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001453v1_decoy	1507	124	0.08	0	1
chrUn_JTFH01001453v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001459v1_decoy	1488	1320	0.89	0	10
chrUn_JTFH01001459v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001465v1_decoy	1472	73	0.05	0	1
chrUn_JTFH01001465v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001474v1_decoy	1444	125	0.09	0	1
chrUn_JTFH01001474v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001537v1_decoy	1317	150	0.11	0	1
chrUn_JTFH01001537v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001549v1_decoy	1283	150	0.12	0	1
chrUn_JTFH01001549v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001632v1_decoy	1126	511	0.45	0	3
chrUn_JTFH01001632v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001680v1_decoy	1063	559	0.53	0	4
chrUn_JTFH01001680v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001696v1_decoy	1035	300	0.29	0	2
chrUn_JTFH01001696v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001701v1_decoy	1026	92	0.09	0	1
chrUn_JTFH01001701v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001786v1_decoy	5130	300	0.06	0	1
chrUn_JTFH01001786v1_decoy_region	0	0	0.00	0	0
chrUn_JTFH01001987v1_decoy	2068	68	0.03	0	1
chrUn_JTFH01001987v1_decoy_region	0	0	0.00	0	0
HLA-A*74:02:01:01	2918	137	0.05	0	1
HLA-A*74:02:01:01_region	0	0	0.00	0	0
HLA-C*04:71	3086	141	0.05	0	1
HLA-C*04:71_region	0	0	0.00	0	0
HLA-C*05:09:01	3322	141	0.04	0	1
HLA-C*05:09:01_region	0	0	0.00	0	0
total	3149251468	386595055	0.12	0	6413
total_region	392232	173653841	442.73	0	1807