File Info
- Filename
- HCC1395_tumor_full_basic_stats.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/qc_markdup/seqtools/HCC1395_tumor/HCC1395_tumor_full_basic_stats.tsv
- Size
- 1.8 KB
- Workflow Run
- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:35 PM
Content
View in new tab| name | reads | unmapped | frac_unmapped | unique_reads | frac_dupes | pairs | frac_reads_on_target | frac_reads_off_target | frac_pairs_on_target | frac_pairs_off_target | frag_size_q20 | frag_size_median | frag_size_q80 | proper_pairs | frac_proper_pairs | pairs_on_target | pairs_off_target | reads_on_target | reads_off_target | frag_size_mean | frag_size_std | dupes | n_q20 | n_q25 | n_q30 | n_bases | bed | saturation_at_1000000_reads | gc_0.0 | gc_0.05 | gc_0.1 | gc_0.15 | gc_0.2 | gc_0.25 | gc_0.3 | gc_0.35 | gc_0.4 | gc_0.45 | gc_0.5 | gc_0.55 | gc_0.6 | gc_0.65 | gc_0.7 | gc_0.75 | gc_0.8 | gc_0.85 | gc_0.9 | gc_0.95 | gc_1.0 | min_depth | mean_depth | cv_depth | max_depth | q1_depth | q5_depth | q50_depth | q95_depth | q99_depth | lt100x | lt700x | n_bases_gt30x | n_bases_gt100x | frac_bases_gt30x | frac_bases_gt100x | roi_size | contam | n_sites | loglik | lrt | bed_base_count |
| HCC1395_tumor.dedup | 5349410 | 32 | 6e-06 | 3265854 | 0.389493 | 1632908 | 0.641116 | 0.358874 | 0.753123 | 0.246877 | 160 | 268 | 419 | 1631199 | 0.998953 | 1228494 | 402705 | 2093791 | 1172031 | 295.620949 | 121.652489 | 2083556 | 0.979988 | 0.942888 | 0.942888 | 802406700 | xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed | 111 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.249999 | 0.373982 | 0.457033 | 0.772462 | 1.680841 | 1.243569 | 0.849316 | 0.999131 | 0.907296 | 0.714163 | 0.855137 | 0.565877 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 390.241157 | 0.527348 | 1599.0 | 80.0 | 127.0 | 295.0 | 1192.0 | 1386.0 | 0.022123 | 0.881294 | 389566 | 381509 | 0.998529 | 0.977877 | 390140 | 0.0 | 75 | -75.0741 | -0.003 | 392232 |
| HCC1395_tumor.dedup | 5349410 | 32 | 6e-06 | 3265854 | 0.389493 | 1632908 | 0.022835 | 0.977155 | 0.03212 | 0.96788 | 160 | 268 | 419 | 1631199 | 0.998953 | 52394 | 1578805 | 74576 | 3191246 | 295.620949 | 121.652489 | 2083556 | 0.979988 | 0.942888 | 0.942888 | 802406700 | altera_v3_targets_coding_postQC_hg38_chr21.bed | 111 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.577098 | 0.665645 | 0.595898 | 0.813455 | 1.324829 | 0.7363 | 3.154902 | 2.083725 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 58.0 | 628.299297 | 0.364202 | 1415.0 | 111.0 | 187.0 | 602.0 | 1110.0 | 1201.0 | 0.006232 | 0.627357 | 6258 | 6219 | 1.0 | 0.993768 | 6258 | 0.0 | 75 | -75.0741 | -0.003 | 6259 |
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