File Info
- Filename
- Sig_18_tissue_full_basic_stats.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/qc_markdup/seqtools/Sig_18_tissue/Sig_18_tissue_full_basic_stats.tsv
- Size
- 1.8 KB
- Workflow Run
- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:36 PM
Content
View in new tab| name | reads | unmapped | frac_unmapped | unique_reads | frac_dupes | pairs | frac_reads_on_target | frac_reads_off_target | frac_pairs_on_target | frac_pairs_off_target | frag_size_q20 | frag_size_median | frag_size_q80 | proper_pairs | frac_proper_pairs | pairs_on_target | pairs_off_target | reads_on_target | reads_off_target | frag_size_mean | frag_size_std | dupes | n_q20 | n_q25 | n_q30 | n_bases | bed | saturation_at_1000000_reads | gc_0.0 | gc_0.05 | gc_0.1 | gc_0.15 | gc_0.2 | gc_0.25 | gc_0.3 | gc_0.35 | gc_0.4 | gc_0.45 | gc_0.5 | gc_0.55 | gc_0.6 | gc_0.65 | gc_0.7 | gc_0.75 | gc_0.8 | gc_0.85 | gc_0.9 | gc_0.95 | gc_1.0 | min_depth | mean_depth | cv_depth | max_depth | q1_depth | q5_depth | q50_depth | q95_depth | q99_depth | lt100x | lt700x | n_bases_gt30x | n_bases_gt100x | frac_bases_gt30x | frac_bases_gt100x | roi_size | contam | n_sites | loglik | lrt | bed_base_count |
| Sig_18_tissue.dedup | 12310172 | 66 | 5e-06 | 8422055 | 0.315846 | 4210989 | 0.712469 | 0.287523 | 0.784006 | 0.215994 | 139 | 220 | 339 | 4206867 | 0.999021 | 3298207 | 908660 | 6000451 | 2421538 | 244.532906 | 95.833229 | 3888117 | 0.980754 | 0.947525 | 0.947525 | 1846515900 | xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed | 384 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.262641 | 0.401198 | 0.443392 | 0.846501 | 1.446299 | 1.370073 | 1.117082 | 0.922918 | 0.807189 | 0.628409 | 0.733141 | 0.486966 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1112.818429 | 0.613165 | 6000.0 | 210.0 | 308.0 | 773.0 | 3908.0 | 4838.0 | 0.002902 | 0.423758 | 389703 | 389008 | 0.99888 | 0.997098 | 390140 | 0.0 | 64 | -137.9522 | -0.0057 | 392232 |
| Sig_18_tissue.dedup | 12310172 | 66 | 5e-06 | 8422055 | 0.315846 | 4210989 | 0.032132 | 0.96786 | 0.040172 | 0.959828 | 139 | 220 | 339 | 4206867 | 0.999021 | 168998 | 4037869 | 270616 | 8151373 | 244.532906 | 95.833229 | 3888117 | 0.980754 | 0.947525 | 0.947525 | 1846515900 | altera_v3_targets_coding_postQC_hg38_chr21.bed | 384 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.448516 | 0.586755 | 0.70741 | 0.873907 | 1.482464 | 0.74531 | 2.722154 | 1.087062 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 434.0 | 2296.4062 | 0.327678 | 4892.0 | 669.0 | 905.0 | 2188.0 | 3831.0 | 4375.0 | 0.0 | 0.011985 | 6258 | 6258 | 1.0 | 1.0 | 6258 | 0.0 | 64 | -137.9522 | -0.0057 | 6259 |
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