File Info
- Filename
- HCC1395_BL.mutect2_tumor_only.filtered_custom.ann_snpEff.genes.txt
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/variant_calling/chip_variants/HCC1395_BL/somatic_normal/HCC1395_BL.mutect2_tumor_only.filtered_custom.ann_snpEff.genes.txt
- Size
- 5.7 KB
- Workflow Run
- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:39 PM
Content
View in new tab# The following table is formatted as tab separated values. #GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_3_prime_UTR_variant variants_effect_5_prime_UTR_variant variants_effect_conservative_inframe_insertion variants_effect_disruptive_inframe_insertion variants_effect_downstream_gene_variant variants_effect_frameshift_variant variants_effect_intron_variant variants_effect_missense_variant variants_effect_non_coding_transcript_exon_variant variants_effect_splice_region_variant variants_effect_stop_gained variants_effect_synonymous_variant variants_effect_upstream_gene_variant APP ENSG00000142192 ENST00000346798 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 BAGE2 ENSG00000187172 ENST00000496773 transcribed_unprocessed_pseudogene 0 1 0 9 0 0 0 0 0 0 0 0 10 1 0 0 0 BRWD1 ENSG00000185658 ENST00000333229 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 C21orf58 ENSG00000160298 ENST00000291691 protein_coding 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 CFAP410 ENSG00000160226 ENST00000397956 protein_coding 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 COL18A1 ENSG00000182871 ENST00000359759 protein_coding 0 2 1 0 0 0 0 0 0 0 0 1 0 0 0 2 0 COL6A2 ENSG00000142173 ENST00000300527 protein_coding 0 3 1 0 0 0 0 0 0 0 0 1 0 0 0 3 0 CRYZL1 ENSG00000205758 ENST00000381554 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 DONSON ENSG00000159147 ENST00000303071 protein_coding 0 0 1 2 0 0 0 0 2 0 0 1 0 0 0 0 0 DOP1B ENSG00000142197 ENST00000399151 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 DSCAM ENSG00000171587 ENST00000400454 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 ENSG00000184441 ENSG00000184441 ENST00000448927 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ENSG00000229047 ENSG00000229047 ENST00000446301 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 ENSG00000231201 ENSG00000231201 ENST00000436429 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ENSG00000235609 ENSG00000235609 ENST00000432230 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 ENSG00000241728 ENSG00000241728 ENST00000422357 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ENSG00000249209 ENSG00000249209 ENST00000429238 protein_coding 0 0 0 2 0 0 0 0 0 0 2 0 0 0 0 0 0 ENSG00000264452 ENSG00000264452 ENST00000583496 snoRNA 0 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 ENSG00000266692 ENSG00000266692 ENST00000581669 snoRNA 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 ENSG00000276612 ENSG00000276612 ENST00000623476 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ENSG00000286153 ENSG00000286153 ENST00000651798 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 ETS2 ENSG00000157557 ENST00000667466 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 FTCD ENSG00000160282 ENST00000397748 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 GATD3B ENSG00000280071 ENST00000620528 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 GET1-SH3BGR ENSG00000285815 ENST00000647779 protein_coding 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 ICOSLG ENSG00000160223 ENST00000400379 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 ITGB2 ENSG00000160255 ENST00000302347 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 ITSN1 ENSG00000205726 ENST00000381318 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 KRTAP10-1 ENSG00000215455 ENST00000400375 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 KRTAP10-10 ENSG00000221859 ENST00000380095 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 KRTAP10-11 ENSG00000243489 ENST00000334670 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 KRTAP10-2 ENSG00000205445 ENST00000391621 protein_coding 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 KRTAP10-3 ENSG00000212935 ENST00000391620 protein_coding 0 2 3 0 0 0 0 0 0 0 0 3 0 0 0 2 0 KRTAP10-6 ENSG00000188155 ENST00000400368 protein_coding 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 KRTAP12-2 ENSG00000221864 ENST00000360770 protein_coding 0 0 4 0 0 0 0 0 0 0 0 4 0 0 0 0 0 KRTAP12-3 ENSG00000205439 ENST00000397907 protein_coding 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 KRTAP12-4 ENSG00000212933 ENST00000391618 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 LINC00334 ENSG00000182586 ENST00000670960 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 LINC01426 ENSG00000234380 ENST00000420877 0 0 0 4 0 0 0 0 4 0 0 0 0 0 0 0 0 LTN1 ENSG00000198862 ENST00000614971 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 NRIP1 ENSG00000180530 ENST00000318948 protein_coding 0 0 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 PFKL ENSG00000141959 ENST00000349048 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 POFUT2 ENSG00000186866 ENST00000349485 protein_coding 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 RUNX1 ENSG00000159216 ENST00000300305 protein_coding 0 0 0 12 6 4 0 0 0 0 2 0 0 0 0 0 0 SH3BGR ENSG00000185437 ENST00000333634 protein_coding 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 SLC19A1 ENSG00000173638 ENST00000311124 protein_coding 0 0 0 2 0 0 0 0 2 0 0 0 0 0 0 0 0 SON ENSG00000159140 ENST00000356577 protein_coding 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 SUMO3 ENSG00000184900 ENST00000397893 protein_coding 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 SYNJ1 ENSG00000159082 ENST00000433931 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 TIAM1 ENSG00000156299 ENST00000286827 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 TMPRSS2 ENSG00000184012 ENST00000679263 protein_coding 0 0 0 18 0 0 0 0 0 0 18 0 0 0 0 0 0 TRPM2 ENSG00000142185 ENST00000397932 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 TSPEAR ENSG00000175894 ENST00000323084 protein_coding 0 0 0 17 0 0 0 0 0 0 17 0 0 0 0 0 0 UBE2G2 ENSG00000184787 ENST00000345496 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 UMODL1 ENSG00000177398 ENST00000408989 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 UMODL1-AS1 ENSG00000184385 ENST00000329015 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 URB1 ENSG00000142207 ENST00000382751 protein_coding 0 1 2 0 0 0 0 0 0 0 0 2 0 0 0 1 0 USP25 ENSG00000155313 ENST00000400183 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 YBEY ENSG00000182362 ENST00000329319 protein_coding 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0