File Info
- Filename
- Sig_18_Blood.entropy.entropy_custom.ann_snpEff.csv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/snpeff/tiddit/Sig_18_Blood/Sig_18_Blood.entropy.entropy_custom.ann_snpEff.csv
- Size
- 2.5 KB
- Workflow Run
- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:40 PM
Content
View in new tab| # | Summary | table | |||||||
| Name | , | Value | |||||||
| Genome | , | GRCh38.105 | |||||||
| Date | , | 2026-02-02 | 21:40 | ||||||
| SnpEff_version | , | SnpEff | 5.1d | (build | 2022-04-19 | 15:49), | by | Pablo | Cingolani |
| Command_line_arguments | , | SnpEff | GRCh38.105 | -csvStats | Sig_18_Blood.entropy.entropy_custom.ann_snpEff.csv | Sig_18_Blood.entropy.entropy_custom.ann.vcf.gz | |||
| Warnings | , | 0 | |||||||
| Number_of_lines_in_input_file, | 6 | ||||||||
| Number_of_variants_before_filter, | 6 | ||||||||
| Number_of_not_variants | , | 0 | |||||||
| Number_of_variants_processed | , | 6 | |||||||
| Number_of_known_variants | (i.e. | non-empty | ID) | , | 6, | 100% | |||
| Number_of_effects | , | 14 | |||||||
| Genome_total_length | ,63147197748 | ||||||||
| Genome_effective_length | ,46709983 | ||||||||
| Change_rate | , | 7784997 | |||||||
| # | Change | rate | by | chromosome | |||||
| Chromosome | , | Length | , | Changes | , | Change_rate | |||
| 21 | , | 46709983 | , | 6 | , | 7784997 | |||
| # | Variantss | by | type | ||||||
| Type | , | Count | , | Percent | |||||
| DUP | , | 6 | , | 100% | |||||
| # | Effects | by | impact | ||||||
| Type | , | Count | , | Percent | |||||
| MODIFIER | , | 14 | , | 100% | |||||
| # | Effects | by | functional | class | |||||
| Type | , | Count | , | Percent | |||||
| Missense_Silent_ratio, | 0 | ||||||||
| # | Count | by | effects | ||||||
| Type | , | Count | , | Percent | |||||
| downstream_gene_variant | , | 2 | , | 14.285714% | |||||
| intragenic_variant | , | 5 | , | 35.714286% | |||||
| intron_variant | , | 3 | , | 21.428571% | |||||
| non_coding_transcript_exon_variant | , | 1 | , | 7.142857% | |||||
| upstream_gene_variant | , | 3 | , | 21.428571% | |||||
| # | Count | by | genomic | region | |||||
| Type | , | Count | , | Percent | |||||
| DOWNSTREAM | , | 2 | , | 14.285714% | |||||
| EXON | , | 1 | , | 7.142857% | |||||
| INTRON | , | 3 | , | 21.428571% | |||||
| TRANSCRIPT | , | 5 | , | 35.714286% | |||||
| UPSTREAM | , | 3 | , | 21.428571% | |||||
| # | Quality | ||||||||
| Values | , | 20,35,40,50,80 | |||||||
| Count | , | 1,1,1,1,2 | |||||||
| # | InDel | lengths | |||||||
| # | Base | changes | |||||||
| base | , | A | , | C | , | G | , | T | |
| A | , | 0 | , | 0 | , | 0 | , | 0 | |
| C | , | 0 | , | 0 | , | 0 | , | 0 | |
| G | , | 0 | , | 0 | , | 0 | , | 0 | |
| T | , | 0 | , | 0 | , | 0 | , | 0 | |
| # | Ts/Tv | summary | |||||||
| Transitions | , | 0 | |||||||
| Transversions | , | 0 | |||||||
| Ts_Tv_ratio | , | 0 | |||||||
| # | Ts/Tv | : | All | variants | |||||
| No | results | available | (empty | input?) | |||||
| # | Ts/Tv | : | Known | variants | |||||
| No | results | available | (empty | input?) | |||||
| # | Allele | frequency | |||||||
| # | Allele | frequency | : | All | variants | ||||
| Values | , | 50,100 | |||||||
| Count | , | 1,5 | |||||||
| # | Allele | Count | |||||||
| Values | , | 1,2 | |||||||
| Count | , | 1,5 | |||||||
| # | Hom/Het | table | |||||||
| Sample_names | , | Sig_18_Sig_18_Blood | |||||||
| Reference | , | 0 | |||||||
| Het | , | 1 | |||||||
| Hom | , | 5 | |||||||
| Missing | , | 0 | |||||||
| # | Codon | change | table | ||||||
| codons | |||||||||
| # | Amino | acid | change | table | |||||
| aa | |||||||||
| # | Chromosome | change | table | ||||||
| 21, | Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000 | ||||||||
| 21,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,1,0,1,2,1,0 |
120 rows