# Summary table 

Name , Value
Genome , GRCh38.105 
Date , 2026-02-02 21:40
SnpEff_version , SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani
Command_line_arguments , SnpEff  GRCh38.105 -csvStats HCC1395_BL.entropy.entropy_custom.ann_snpEff.csv HCC1395_BL.entropy.entropy_custom.ann.vcf.gz 
Warnings , 0 
Number_of_lines_in_input_file, 4
Number_of_variants_before_filter, 4
Number_of_not_variants , 0
Number_of_variants_processed , 4
Number_of_known_variants (i.e. non-empty ID) , 2, 50% 
Number_of_effects , 13 
Genome_total_length ,63147197748 
Genome_effective_length ,46709983 
Change_rate , 11677495 

# Change rate by chromosome

Chromosome , Length , Changes , Change_rate 
21 , 46709983 , 4 , 11677495

# Variantss by type

Type , Count , Percent 
BND , 2 , 50% 
DUP , 2 , 50% 

# Effects by impact

Type , Count , Percent 
HIGH , 8 , 61.538462% 
MODIFIER , 5 , 38.461538% 

# Effects by functional class

Type , Count , Percent 

Missense_Silent_ratio, 0

# Count by effects

Type , Count , Percent 
frameshift_variant , 8 , 38.095238% 
gene_fusion , 8 , 38.095238% 
intragenic_variant , 3 , 14.285714% 
intron_variant , 1 , 4.761905% 
upstream_gene_variant , 1 , 4.761905% 

# Count by genomic region

Type , Count , Percent 
GENE , 8 , 61.538462% 
INTRON , 1 , 7.692308% 
TRANSCRIPT , 3 , 23.076923% 
UPSTREAM , 1 , 7.692308% 

# Quality 

Values , 50,80
Count , 1,3

# InDel lengths


# Base changes

base  , A  , C  , G  , T 
 A  , 0  , 0  , 0  , 0 
 C  , 0  , 0  , 0  , 0 
 G  , 0  , 0  , 0  , 0 
 T  , 0  , 0  , 0  , 0 

# Ts/Tv summary

Transitions , 0
Transversions , 0
Ts_Tv_ratio , 0

# Ts/Tv : All variants

No results available (empty input?)

# Ts/Tv : Known variants

No results available (empty input?)

# Allele frequency

# Allele frequency : All variants

Values , 50,100
Count , 2,2

# Allele Count

Values , 1,2
Count , 2,2

# Hom/Het table

Sample_names , HCC1395_HCC1395_BL
Reference , 0
Het , 2
Hom , 2
Missing , 0


# Codon change table
	
codons 

# Amino acid change table

aa 

# Chromosome change table

21, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000
21,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,1,0,0,0