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- HCC1395_tumor_vs_HCC1395_BL.strelka.somatic_snvs_custom.ann_snpEff.genes.txt
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- Feb 02, 2026 1:41 PM
Content
View in new tab# The following table is formatted as tab separated values. #GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_downstream_gene_variant variants_effect_intron_variant variants_effect_missense_variant variants_effect_non_coding_transcript_exon_variant variants_effect_splice_region_variant variants_effect_stop_gained variants_effect_stop_lost variants_effect_synonymous_variant variants_effect_upstream_gene_variant ADAMTS1 ENSG00000154734 ENST00000284984 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 APP ENSG00000142192 ENST00000346798 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 ATP5PF ENSG00000154723 ENST00000400099 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 BACE2 ENSG00000182240 ENST00000330333 protein_coding 0 0 0 3 0 3 0 0 0 0 0 0 0 BACE2-IT1 ENSG00000224388 ENST00000433378 0 0 0 3 0 0 0 0 0 0 0 0 3 BAGE2 ENSG00000187172 ENST00000496773 transcribed_unprocessed_pseudogene 0 0 0 1 0 0 0 1 0 0 0 0 0 BRWD1 ENSG00000185658 ENST00000333229 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 C21orf58 ENSG00000160298 ENST00000291691 protein_coding 0 0 1 2 0 1 1 0 0 0 0 0 1 CFAP298-TCP10L ENSG00000265590 ENST00000673807 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 CHODL ENSG00000154645 ENST00000299295 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 CLDN14 ENSG00000159261 ENST00000342108 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 CLIC6 ENSG00000159212 ENST00000360731 protein_coding 0 2 2 0 0 0 2 0 0 0 0 2 0 COL18A1 ENSG00000182871 ENST00000359759 protein_coding 0 2 0 0 0 0 0 0 0 0 0 2 0 COL6A1 ENSG00000142156 ENST00000361866 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 COL6A2 ENSG00000142173 ENST00000300527 protein_coding 0 4 2 0 0 0 2 0 0 0 0 4 0 CRYZL1 ENSG00000205758 ENST00000381554 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 DIP2A ENSG00000160305 ENST00000651436 protein_coding 0 4 0 0 0 0 0 0 0 0 0 4 0 DOP1B ENSG00000142197 ENST00000399151 protein_coding 0 1 1 0 0 0 1 0 0 0 0 1 0 DSCAM ENSG00000171587 ENST00000400454 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 ENSG00000223901 ENSG00000223901 ENST00000418029 0 0 0 3 1 0 0 1 0 0 0 0 1 ENSG00000230479 ENSG00000230479 ENST00000429588 0 0 0 1 0 1 0 0 0 0 0 0 0 ENSG00000233818 ENSG00000233818 ENST00000428667 0 0 0 1 0 1 0 0 0 0 0 0 0 ENSG00000239415 ENSG00000239415 ENST00000430259 0 0 0 1 0 0 0 0 0 0 0 0 1 ENSG00000249209 ENSG00000249209 ENST00000429238 protein_coding 0 0 0 5 0 5 0 0 0 0 0 0 0 ENSG00000273840 ENSG00000273840 ENST00000612267 0 0 0 1 0 0 0 1 0 0 0 0 0 ENSG00000276873 ENSG00000276873 ENST00000616808 misc_RNA 0 0 0 1 0 0 0 0 0 0 0 0 1 ENSG00000280604 ENSG00000280604 ENST00000626237 0 0 0 2 0 0 0 1 0 0 0 0 1 ENSG00000286224 ENSG00000286224 ENST00000652508 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 ENSG00000289421 ENSG00000289421 ENST00000689761 0 0 0 1 1 0 0 0 0 0 0 0 0 ERG ENSG00000157554 ENST00000398919 protein_coding 0 0 0 1 1 0 0 0 0 0 0 0 0 FTCD ENSG00000160282 ENST00000397748 protein_coding 0 0 1 1 1 0 1 0 0 0 0 0 0 GABPA ENSG00000154727 ENST00000354828 protein_coding 0 0 1 1 0 0 1 0 0 0 0 0 1 GART ENSG00000159131 ENST00000381815 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 GET1 ENSG00000182093 ENST00000649170 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 GET1-SH3BGR ENSG00000285815 ENST00000647779 protein_coding 0 1 1 0 0 0 1 0 0 0 0 1 0 HUNK ENSG00000142149 ENST00000270112 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 ICOSLG ENSG00000160223 ENST00000400379 protein_coding 0 2 4 0 0 0 4 0 0 0 0 2 0 IFNAR1 ENSG00000142166 ENST00000270139 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 ITSN1 ENSG00000205726 ENST00000381318 protein_coding 0 0 4 0 0 0 4 0 0 0 0 0 0 JAM2 ENSG00000154721 ENST00000400532 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 KCNJ15 ENSG00000157551 ENST00000328656 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 KCNJ6 ENSG00000157542 ENST00000609713 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 KCNJ6-AS1 ENSG00000233213 ENST00000435001 0 0 0 2 2 0 0 0 0 0 0 0 0 KRTAP10-11 ENSG00000243489 ENST00000334670 protein_coding 0 1 3 0 0 0 3 0 0 0 0 1 0 KRTAP10-2 ENSG00000205445 ENST00000391621 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 KRTAP10-4 ENSG00000215454 ENST00000400374 protein_coding 0 1 4 2 2 0 4 0 0 0 0 1 0 KRTAP10-5 ENSG00000241123 ENST00000400372 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 KRTAP10-6 ENSG00000188155 ENST00000400368 protein_coding 0 1 5 0 0 0 5 0 0 0 0 1 0 KRTAP10-7 ENSG00000272804 ENST00000609664 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 KRTAP21-1 ENSG00000187005 ENST00000335093 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 LINC00205 ENSG00000223768 ENST00000400362 0 0 0 1 0 0 0 0 0 0 0 0 1 LINC00334 ENSG00000182586 ENST00000670960 0 0 0 1 1 0 0 0 0 0 0 0 0 LINC01424 ENSG00000236519 ENST00000692279 0 0 0 1 0 0 0 0 0 0 0 0 1 LSS ENSG00000160285 ENST00000356396 protein_coding 0 2 3 0 0 0 3 0 0 0 0 2 0 MCM3AP ENSG00000160294 ENST00000291688 protein_coding 0 4 1 0 0 0 1 0 0 0 0 4 0 MIR6501 ENSG00000284448 ENST00000290239 miRNA 0 0 0 2 2 0 0 0 0 0 0 0 0 PCBP2P1 ENSG00000235701 ENST00000437262 processed_pseudogene 0 0 0 1 0 0 0 0 0 0 0 0 1 PCBP3 ENSG00000183570 ENST00000400314 protein_coding 0 1 0 1 0 1 0 0 0 0 0 1 0 PCNT ENSG00000160299 ENST00000359568 protein_coding 0 2 6 0 0 0 6 0 0 0 0 2 0 PLAC4 ENSG00000280109 ENST00000645185 0 0 0 3 0 0 0 3 0 0 0 0 0 POFUT2 ENSG00000186866 ENST00000349485 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 PSMG1 ENSG00000183527 ENST00000331573 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 RPL18AP2 ENSG00000225043 ENST00000450007 processed_pseudogene 0 0 0 1 1 0 0 0 0 0 0 0 0 S100B ENSG00000160307 ENST00000367071 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 SH3BGR ENSG00000185437 ENST00000333634 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 SIM2 ENSG00000159263 ENST00000290399 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 SLC19A1 ENSG00000173638 ENST00000311124 protein_coding 0 1 0 0 0 0 0 0 1 0 0 1 0 SON ENSG00000159140 ENST00000356577 protein_coding 0 1 1 1 0 0 1 0 0 0 0 1 1 TCP10L ENSG00000242220 ENST00000300258 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0 TFF1 ENSG00000160182 ENST00000291527 protein_coding 1 0 0 0 0 0 0 0 0 0 1 0 0 TIAM1 ENSG00000156299 ENST00000286827 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 TMPRSS15 ENSG00000154646 ENST00000284885 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 TMPRSS2 ENSG00000184012 ENST00000679263 protein_coding 0 0 0 2 0 2 0 0 0 0 0 0 0 TPTE ENSG00000274391 ENST00000618007 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 TRAPPC10 ENSG00000160218 ENST00000291574 protein_coding 1 0 1 0 0 0 1 0 1 1 0 0 0 TRPM2 ENSG00000142185 ENST00000397932 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 TSPEAR ENSG00000175894 ENST00000323084 protein_coding 0 0 0 19 0 19 0 0 0 0 0 0 0 TTC3 ENSG00000182670 ENST00000354749 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 TTC3-AS1 ENSG00000228677 ENST00000424733 0 0 0 1 0 0 0 0 0 0 0 0 1 UBE2G2 ENSG00000184787 ENST00000345496 protein_coding 1 1 0 0 0 0 0 0 0 1 0 1 0 UMODL1 ENSG00000177398 ENST00000408989 protein_coding 0 1 1 0 0 0 1 0 0 0 0 1 0 UMODL1-AS1 ENSG00000184385 ENST00000329015 0 0 0 1 0 0 0 0 0 0 0 0 1 USP25 ENSG00000155313 ENST00000400183 protein_coding 0 0 2 0 0 0 2 0 0 0 0 0 0 YBEY ENSG00000182362 ENST00000329319 protein_coding 0 0 0 2 0 0 0 0 0 0 0 0 2 ZBTB21 ENSG00000173276 ENST00000310826 protein_coding 0 1 0 0 0 0 0 0 0 0 0 1 0