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- Sig_18_tissue_vs_Sig_18_Blood.tnseq.orientation_data.tsv
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- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/variant_calling/tnseq/Sig_18_tissue_vs_Sig_18_Blood/Sig_18_tissue_vs_Sig_18_Blood.tnseq.orientation_data.tsv
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- Feb 02, 2026 1:41 PM
Content
View in new tab| #<METADATA>SAMPLE=Sig_18_Sig_18_tissue | |||||||||||||||
| context | rev_comp | f1r2_a | f1r2_c | f1r2_g | f1r2_t | f2r1_a | f2r1_c | f2r1_g | f2r1_t | hom_ref | germline_het | somatic_het | hom_var | num_examples | num_alt_examples |
| AAA | TTT | 0 | 1.30106e-05 | 1.07217e-05 | 7.24999e-06 | 0 | 7.63692e-06 | 8.15482e-06 | 7.23607e-06 | 0.999065 | 0.000238466 | 0.000350061 | 0.000292767 | 14002 | 2987 |
| AAC | GTT | 0 | 1.34066e-05 | 0.000395902 | 1.19089e-05 | 0 | 1.36929e-05 | 1.9723e-05 | 1.19405e-05 | 0.997696 | 9.73097e-05 | 0.00149614 | 0.000244044 | 8604 | 1968 |
| AAG | CTT | 0 | 7.93067e-06 | 0.000108858 | 7.57229e-06 | 0 | 1.54996e-05 | 9.12054e-06 | 7.57871e-06 | 0.998248 | 3.61975e-05 | 0.00117919 | 0.000380143 | 13415 | 3417 |
| AAT | ATT | 0 | 1.3994e-05 | 1.22629e-05 | 1.10963e-05 | 0 | 1.2427e-05 | 1.20175e-05 | 1.11219e-05 | 0.998765 | 0.000141357 | 0.000996282 | 2.41116e-05 | 9110 | 1991 |
| ACA | TGT | 0.000648385 | 0 | 8.49767e-06 | 1.40101e-05 | 0.00191787 | 0 | 9.14697e-06 | 9.69559e-06 | 0.996059 | 8.41615e-05 | 0.00082125 | 0.000427852 | 11919 | 5865 |
| ACC | GGT | 5.69103e-05 | 0 | 1.0253e-05 | 1.61014e-05 | 0.000555275 | 0 | 1.02524e-05 | 1.09861e-05 | 0.998148 | 0.000881939 | 0.000300477 | 1.01451e-05 | 9856 | 4457 |
| ACG | CGT | 0.000563499 | 0 | 2.03683e-05 | 0.000468048 | 0.00219388 | 0 | 2.0743e-05 | 8.39894e-05 | 0.988774 | 0.000469951 | 0.00604201 | 0.00136392 | 4968 | 2928 |
| ACT | AGT | 9.46907e-05 | 0 | 1.08416e-05 | 1.72203e-05 | 0.000756802 | 0 | 1.08263e-05 | 1.82681e-05 | 0.997262 | 9.80821e-05 | 0.00150694 | 0.000224767 | 9342 | 4090 |
| AGA | TCT | 0.000138269 | 9.01082e-05 | 0 | 0.000117169 | 0.000215879 | 8.41897e-06 | 0 | 0.000121133 | 0.998276 | 0.000105542 | 0.000570157 | 0.000357093 | 14280 | 4806 |
| AGC | GCT | 0.000186025 | 6.8548e-06 | 0 | 0.00105446 | 4.08709e-05 | 6.81146e-06 | 0 | 0.000761872 | 0.996562 | 1.90059e-05 | 0.00115203 | 0.000209672 | 14784 | 6902 |
| AGG | CCT | 6.95198e-06 | 6.02103e-05 | 0 | 9.74199e-05 | 0.000218545 | 0.000136676 | 0 | 0.000227575 | 0.997885 | 4.92607e-05 | 0.000921452 | 0.00039698 | 15365 | 6306 |
| AGT | ACT | 1.82681e-05 | 1.08263e-05 | 0 | 0.000756802 | 1.72203e-05 | 1.08416e-05 | 0 | 9.46907e-05 | 0.997262 | 9.80821e-05 | 0.00150694 | 0.000224767 | 9342 | 4090 |
| ATA | TAT | 1.61264e-05 | 1.66994e-05 | 1.81328e-05 | 0 | 1.59011e-05 | 0.000491239 | 5.00215e-05 | 0 | 0.996965 | 0.000116803 | 0.00213761 | 0.00017282 | 6364 | 1603 |
| ATC | GAT | 1.12499e-05 | 0.000132256 | 0.000176915 | 0 | 1.08523e-05 | 0.000285612 | 1.15871e-05 | 0 | 0.997682 | 4.49107e-05 | 0.000988876 | 0.00065592 | 9292 | 1918 |
| ATG | CAT | 9.01238e-06 | 0.000101783 | 2.41623e-05 | 0 | 8.98271e-06 | 0.000349744 | 1.1252e-05 | 0 | 0.995825 | 0.000185686 | 0.00242224 | 0.00106196 | 11393 | 2625 |
| ATT | AAT | 1.11219e-05 | 1.20175e-05 | 1.2427e-05 | 0 | 1.10963e-05 | 1.22629e-05 | 1.3994e-05 | 0 | 0.998765 | 0.000141357 | 0.000996282 | 2.41116e-05 | 9110 | 1991 |
| CAA | TTG | 0 | 1.06703e-05 | 1.17104e-05 | 9.14722e-06 | 0 | 9.734e-06 | 1.01998e-05 | 9.22725e-06 | 0.998631 | 9.82811e-05 | 0.000932155 | 0.000277852 | 11156 | 2619 |
| CAC | GTG | 0 | 1.20658e-05 | 0.000180351 | 8.84345e-06 | 0 | 0.000121221 | 8.40732e-06 | 8.22315e-06 | 0.995314 | 0.000399708 | 0.00322316 | 0.000724465 | 12560 | 2904 |
| CAG | CTG | 0 | 5.24532e-06 | 9.00855e-05 | 4.90995e-06 | 0 | 7.89717e-06 | 7.39784e-06 | 4.31377e-05 | 0.997539 | 0.000163276 | 0.00160339 | 0.000535266 | 20734 | 5943 |
| CAT | ATG | 0 | 1.1252e-05 | 0.000349744 | 8.98271e-06 | 0 | 2.41623e-05 | 0.000101783 | 9.01238e-06 | 0.995825 | 0.000185686 | 0.00242224 | 0.00106196 | 11393 | 2625 |
| CCA | TGG | 0.000455427 | 0 | 6.03206e-06 | 1.11545e-05 | 0.000467338 | 0 | 6.05224e-06 | 6.51816e-06 | 0.997984 | 9.23079e-06 | 0.000988127 | 6.56991e-05 | 16742 | 7078 |
| CCC | GGG | 9.5814e-05 | 0 | 4.50832e-05 | 0.000242092 | 0.000286284 | 0 | 7.58157e-06 | 8.24002e-06 | 0.998099 | 1.42191e-05 | 0.000947828 | 0.000254008 | 13336 | 5024 |
| CCG | CGG | 0.000224823 | 0 | 1.44059e-05 | 0.00111516 | 0.000527236 | 0 | 3.04594e-05 | 3.00143e-05 | 0.990671 | 0.00105863 | 0.00458674 | 0.00174125 | 7555 | 3973 |
| CCT | AGG | 0.000227575 | 0 | 0.000136676 | 0.000218545 | 9.74199e-05 | 0 | 6.02103e-05 | 6.95198e-06 | 0.997885 | 4.92607e-05 | 0.000921452 | 0.00039698 | 15365 | 6306 |
| CGA | TCG | 0.000217508 | 2.18728e-05 | 0 | 0.000466455 | 0.00299872 | 2.17722e-05 | 0 | 0.000332888 | 0.992879 | 0.000712662 | 0.00189476 | 0.000454251 | 4622 | 2300 |
| CGC | GCG | 0.000426549 | 1.58173e-05 | 0 | 0.00383272 | 0.00024182 | 1.56659e-05 | 0 | 0.000588652 | 0.987581 | 0.000231008 | 0.00503351 | 0.0020329 | 6443 | 3738 |
| CGG | CCG | 3.00143e-05 | 3.04594e-05 | 0 | 0.000527236 | 0.00111516 | 1.44059e-05 | 0 | 0.000224823 | 0.990671 | 0.00105863 | 0.00458674 | 0.00174125 | 7555 | 3973 |
| CGT | ACG | 8.39894e-05 | 2.0743e-05 | 0 | 0.00219388 | 0.000468048 | 2.03683e-05 | 0 | 0.000563499 | 0.988774 | 0.000469951 | 0.00604201 | 0.00136392 | 4968 | 2928 |
| CTA | TAG | 1.92828e-05 | 2.14338e-05 | 4.1671e-05 | 0 | 1.89954e-05 | 0.000505264 | 2.07034e-05 | 0 | 0.995844 | 0.000389897 | 0.00274437 | 0.000394514 | 5322 | 1471 |
| CTC | GAG | 8.03278e-05 | 1.26006e-05 | 7.93913e-05 | 0 | 6.98681e-06 | 0.000210624 | 7.31579e-06 | 0 | 0.997032 | 1.14359e-05 | 0.0022076 | 0.000351579 | 14505 | 3808 |
| CTG | CAG | 4.31377e-05 | 7.39784e-06 | 7.89717e-06 | 0 | 4.90995e-06 | 9.00855e-05 | 5.24532e-06 | 0 | 0.997539 | 0.000163276 | 0.00160339 | 0.000535266 | 20734 | 5943 |
| CTT | AAG | 7.57871e-06 | 9.12054e-06 | 1.54996e-05 | 0 | 7.57229e-06 | 0.000108858 | 7.93067e-06 | 0 | 0.998248 | 3.61975e-05 | 0.00117919 | 0.000380143 | 13415 | 3417 |
| GAA | TTC | 0 | 7.98972e-06 | 8.39552e-06 | 7.37756e-06 | 0 | 9.15835e-06 | 8.96865e-06 | 7.42778e-06 | 0.999416 | 1.52622e-05 | 0.000512538 | 7.30941e-06 | 13680 | 2657 |
| GAC | GTC | 0 | 9.1829e-05 | 3.3543e-05 | 1.07721e-05 | 0 | 2.23666e-05 | 1.32954e-05 | 1.08084e-05 | 0.998145 | 1.68191e-05 | 0.00143178 | 0.000223928 | 9377 | 2011 |
| GAG | CTC | 0 | 7.31579e-06 | 0.000210624 | 6.98681e-06 | 0 | 7.93913e-05 | 1.26006e-05 | 8.03278e-05 | 0.997032 | 1.14359e-05 | 0.0022076 | 0.000351579 | 14505 | 3808 |
| GAT | ATC | 0 | 1.15871e-05 | 0.000285612 | 1.08523e-05 | 0 | 0.000176915 | 0.000132256 | 1.12499e-05 | 0.997682 | 4.49107e-05 | 0.000988876 | 0.00065592 | 9292 | 1918 |
| GCA | TGC | 0.000769006 | 0 | 7.12756e-06 | 0.000191622 | 0.00100528 | 0 | 7.16743e-06 | 8.30561e-05 | 0.996695 | 1.23539e-05 | 0.000939967 | 0.000289221 | 14175 | 7052 |
| GCC | GGC | 0.000124103 | 0 | 6.93892e-06 | 0.000256263 | 0.000843671 | 0 | 6.98452e-06 | 8.79232e-06 | 0.997447 | 8.10311e-06 | 0.000949017 | 0.000349243 | 14602 | 6858 |
| GCG | CGC | 0.000588652 | 0 | 1.56659e-05 | 0.00024182 | 0.00383272 | 0 | 1.58173e-05 | 0.000426549 | 0.987581 | 0.000231008 | 0.00503351 | 0.0020329 | 6443 | 3738 |
| GCT | AGC | 0.000761872 | 0 | 6.81146e-06 | 4.08709e-05 | 0.00105446 | 0 | 6.8548e-06 | 0.000186025 | 0.996562 | 1.90059e-05 | 0.00115203 | 0.000209672 | 14784 | 6902 |
| GGA | TCC | 7.33574e-06 | 6.88787e-06 | 0 | 8.64815e-05 | 0.000164264 | 8.3208e-05 | 0 | 1.11714e-05 | 0.998505 | 7.38449e-05 | 0.000919979 | 0.000142167 | 14658 | 4472 |
| GGC | GCC | 8.79232e-06 | 6.98452e-06 | 0 | 0.000843671 | 0.000256263 | 6.93892e-06 | 0 | 0.000124103 | 0.997447 | 8.10311e-06 | 0.000949017 | 0.000349243 | 14602 | 6858 |
| GGG | CCC | 8.24002e-06 | 7.58157e-06 | 0 | 0.000286284 | 0.000242092 | 4.50832e-05 | 0 | 9.5814e-05 | 0.998099 | 1.42191e-05 | 0.000947828 | 0.000254008 | 13336 | 5024 |
| GGT | ACC | 1.09861e-05 | 1.02524e-05 | 0 | 0.000555275 | 1.61014e-05 | 1.0253e-05 | 0 | 5.69103e-05 | 0.998148 | 0.000881939 | 0.000300477 | 1.01451e-05 | 9856 | 4457 |
| GTA | TAC | 1.78113e-05 | 1.84288e-05 | 0.00011853 | 0 | 1.76541e-05 | 0.000142498 | 1.96769e-05 | 0 | 0.997832 | 4.90548e-05 | 0.00124591 | 0.000538381 | 5757 | 1431 |
| GTC | GAC | 1.08084e-05 | 1.32954e-05 | 2.23666e-05 | 0 | 1.07721e-05 | 3.3543e-05 | 9.1829e-05 | 0 | 0.998145 | 1.68191e-05 | 0.00143178 | 0.000223928 | 9377 | 2011 |
| GTG | CAC | 8.22315e-06 | 8.40732e-06 | 0.000121221 | 0 | 8.84345e-06 | 0.000180351 | 1.20658e-05 | 0 | 0.995314 | 0.000399708 | 0.00322316 | 0.000724465 | 12560 | 2904 |
| GTT | AAC | 1.19405e-05 | 1.9723e-05 | 1.36929e-05 | 0 | 1.19089e-05 | 0.000395902 | 1.34066e-05 | 0 | 0.997696 | 9.73097e-05 | 0.00149614 | 0.000244044 | 8604 | 1968 |
| TAA | TTA | 0 | 1.90652e-05 | 1.75361e-05 | 1.60746e-05 | 0 | 1.71638e-05 | 1.81761e-05 | 1.62936e-05 | 0.997969 | 3.88661e-05 | 0.00139602 | 0.000491673 | 6304 | 1490 |
| TAC | GTA | 0 | 1.96769e-05 | 0.000142498 | 1.76541e-05 | 0 | 0.00011853 | 1.84288e-05 | 1.78113e-05 | 0.997832 | 4.90548e-05 | 0.00124591 | 0.000538381 | 5757 | 1431 |
| TAG | CTA | 0 | 2.07034e-05 | 0.000505264 | 1.89954e-05 | 0 | 4.1671e-05 | 2.14338e-05 | 1.92828e-05 | 0.995844 | 0.000389897 | 0.00274437 | 0.000394514 | 5322 | 1471 |
| TAT | ATA | 0 | 5.00215e-05 | 0.000491239 | 1.59011e-05 | 0 | 1.81328e-05 | 1.66994e-05 | 1.61264e-05 | 0.996965 | 0.000116803 | 0.00213761 | 0.00017282 | 6364 | 1603 |
| TCA | TGA | 0.000227161 | 0 | 7.89056e-06 | 8.86578e-06 | 0.000491191 | 0 | 7.91714e-06 | 9.30101e-06 | 0.998406 | 0.000185454 | 0.000258196 | 0.000398375 | 12801 | 4908 |
| TCC | GGA | 1.11714e-05 | 0 | 8.3208e-05 | 0.000164264 | 8.64815e-05 | 0 | 6.88787e-06 | 7.33574e-06 | 0.998505 | 7.38449e-05 | 0.000919979 | 0.000142167 | 14658 | 4472 |
| TCG | CGA | 0.000332888 | 0 | 2.17722e-05 | 0.00299872 | 0.000466455 | 0 | 2.18728e-05 | 0.000217508 | 0.992879 | 0.000712662 | 0.00189476 | 0.000454251 | 4622 | 2300 |
| TCT | AGA | 0.000121133 | 0 | 8.41897e-06 | 0.000215879 | 0.000117169 | 0 | 9.01082e-05 | 0.000138269 | 0.998276 | 0.000105542 | 0.000570157 | 0.000357093 | 14280 | 4806 |
| TGA | TCA | 9.30101e-06 | 7.91714e-06 | 0 | 0.000491191 | 8.86578e-06 | 7.89056e-06 | 0 | 0.000227161 | 0.998406 | 0.000185454 | 0.000258196 | 0.000398375 | 12801 | 4908 |
| TGC | GCA | 8.30561e-05 | 7.16743e-06 | 0 | 0.00100528 | 0.000191622 | 7.12756e-06 | 0 | 0.000769006 | 0.996695 | 1.23539e-05 | 0.000939967 | 0.000289221 | 14175 | 7052 |
| TGG | CCA | 6.51816e-06 | 6.05224e-06 | 0 | 0.000467338 | 1.11545e-05 | 6.03206e-06 | 0 | 0.000455427 | 0.997984 | 9.23079e-06 | 0.000988127 | 6.56991e-05 | 16742 | 7078 |
| TGT | ACA | 9.69559e-06 | 9.14697e-06 | 0 | 0.00191787 | 1.40101e-05 | 8.49767e-06 | 0 | 0.000648385 | 0.996059 | 8.41615e-05 | 0.00082125 | 0.000427852 | 11919 | 5865 |
| TTA | TAA | 1.62936e-05 | 1.81761e-05 | 1.71638e-05 | 0 | 1.60746e-05 | 1.75361e-05 | 1.90652e-05 | 0 | 0.997969 | 3.88661e-05 | 0.00139602 | 0.000491673 | 6304 | 1490 |
| TTC | GAA | 7.42778e-06 | 8.96865e-06 | 9.15835e-06 | 0 | 7.37756e-06 | 8.39552e-06 | 7.98972e-06 | 0 | 0.999416 | 1.52622e-05 | 0.000512538 | 7.30941e-06 | 13680 | 2657 |
| TTG | CAA | 9.22725e-06 | 1.01998e-05 | 9.734e-06 | 0 | 9.14722e-06 | 1.17104e-05 | 1.06703e-05 | 0 | 0.998631 | 9.82811e-05 | 0.000932155 | 0.000277852 | 11156 | 2619 |
| TTT | AAA | 7.23607e-06 | 8.15482e-06 | 7.63692e-06 | 0 | 7.24999e-06 | 1.07217e-05 | 1.30106e-05 | 0 | 0.999065 | 0.000238466 | 0.000350061 | 0.000292767 | 14002 | 2987 |
66 rows