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- HCC1395_tumor_vs_HCC1395_BL.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt
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- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/698115e9/test_regression_dev_b0193075/reports/raw_qc/snpeff/mutect2/HCC1395_tumor_vs_HCC1395_BL/HCC1395_tumor_vs_HCC1395_BL.mutect2.whatshap.phased_custom.ann_snpEff.genes.txt
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- mipeters-regression-dev-698115e9
- Published
- Feb 02, 2026 1:42 PM
Content
View in new tab# The following table is formatted as tab separated values. #GeneName GeneId TranscriptId BioType variants_impact_HIGH variants_impact_LOW variants_impact_MODERATE variants_impact_MODIFIER variants_effect_3_prime_UTR_variant variants_effect_5_prime_UTR_variant variants_effect_conservative_inframe_deletion variants_effect_conservative_inframe_insertion variants_effect_disruptive_inframe_deletion variants_effect_downstream_gene_variant variants_effect_intron_variant variants_effect_missense_variant variants_effect_non_coding_transcript_exon_variant variants_effect_splice_region_variant variants_effect_stop_gained variants_effect_synonymous_variant variants_effect_upstream_gene_variant APP ENSG00000142192 ENST00000346798 protein_coding 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 BAGE2 ENSG00000187172 ENST00000496773 transcribed_unprocessed_pseudogene 0 1 0 5 0 0 0 0 0 0 0 0 6 1 0 0 0 C21orf58 ENSG00000160298 ENST00000291691 protein_coding 0 0 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0 CFAP410 ENSG00000160226 ENST00000397956 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 DIP2A ENSG00000160305 ENST00000651436 protein_coding 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 ENSG00000184441 ENSG00000184441 ENST00000448927 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ENSG00000227757 ENSG00000227757 ENST00000454622 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 ENSG00000241728 ENSG00000241728 ENST00000422357 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 ENSG00000286153 ENSG00000286153 ENST00000651798 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0 ETS2 ENSG00000157557 ENST00000667466 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 GET1 ENSG00000182093 ENST00000649170 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 GET1-SH3BGR ENSG00000285815 ENST00000647779 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 HLCS ENSG00000159267 ENST00000674895 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 IFNAR1 ENSG00000142166 ENST00000270139 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 KCNJ6 ENSG00000157542 ENST00000609713 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 KCNJ6-AS1 ENSG00000233213 ENST00000435001 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 KRTAP10-2 ENSG00000205445 ENST00000391621 protein_coding 0 1 1 0 0 0 0 0 0 0 0 1 0 0 0 1 0 KRTAP10-4 ENSG00000215454 ENST00000400374 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 KRTAP10-6 ENSG00000188155 ENST00000400368 protein_coding 0 5 0 0 0 0 0 0 0 0 0 0 0 0 0 5 0 KRTAP21-1 ENSG00000187005 ENST00000335093 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 LINC00334 ENSG00000182586 ENST00000670960 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 LINC01426 ENSG00000234380 ENST00000420877 0 0 0 5 0 0 0 0 0 5 0 0 0 0 0 0 0 OLIG1 ENSG00000184221 ENST00000382348 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 PFKL ENSG00000141959 ENST00000349048 protein_coding 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 POFUT2 ENSG00000186866 ENST00000349485 protein_coding 0 0 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0 RUNX1 ENSG00000159216 ENST00000300305 protein_coding 0 0 0 12 5 5 0 0 0 0 2 0 0 0 0 0 0 SCAF4 ENSG00000156304 ENST00000286835 protein_coding 0 0 3 0 0 0 0 0 0 0 0 3 0 0 0 0 0 SLC19A1 ENSG00000173638 ENST00000311124 protein_coding 0 1 1 0 0 0 1 0 0 0 0 0 0 1 0 1 0 TMPRSS2 ENSG00000184012 ENST00000679263 protein_coding 0 0 0 19 0 0 0 0 0 0 19 0 0 0 0 0 0 TRAPPC10 ENSG00000160218 ENST00000291574 protein_coding 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 TSPEAR ENSG00000175894 ENST00000323084 protein_coding 0 0 0 8 0 0 0 0 0 0 8 0 0 0 0 0 0 UBE2G2 ENSG00000184787 ENST00000345496 protein_coding 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 UMODL1 ENSG00000177398 ENST00000408989 protein_coding 0 0 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 UMODL1-AS1 ENSG00000184385 ENST00000329015 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 YBEY ENSG00000182362 ENST00000329319 protein_coding 0 0 0 2 0 0 0 0 0 2 0 0 0 0 0 0 0