# This file was produced by bcftools stats (1.20+htslib-1.20) and can be plotted using plot-vcfstats.
# The command line was:	bcftools stats  Sig_18_tissue_vs_Sig_18_Blood.tnseq.filtered.vcf.gz
#
# Definition of sets:
# ID	[2]id	[3]tab-separated file names
ID	0	Sig_18_tissue_vs_Sig_18_Blood.tnseq.filtered.vcf.gz
# SN, Summary numbers:
#   number of records   .. number of data rows in the VCF
#   number of no-ALTs   .. reference-only sites, ALT is either "." or identical to REF
#   number of SNPs      .. number of rows with a SNP
#   number of MNPs      .. number of rows with a MNP, such as CC>TT
#   number of indels    .. number of rows with an indel
#   number of others    .. number of rows with other type, for example a symbolic allele or
#                          a complex substitution, such as ACT>TCGA
#   number of multiallelic sites     .. number of rows with multiple alternate alleles
#   number of multiallelic SNP sites .. number of rows with multiple alternate alleles, all SNPs
# 
#   Note that rows containing multiple types will be counted multiple times, in each
#   counter. For example, a row with a SNP and an indel increments both the SNP and
#   the indel counter.
# 
# SN	[2]id	[3]key	[4]value
SN	0	number of samples:	2
SN	0	number of records:	363
SN	0	number of no-ALTs:	0
SN	0	number of SNPs:	314
SN	0	number of MNPs:	5
SN	0	number of indels:	47
SN	0	number of others:	0
SN	0	number of multiallelic sites:	14
SN	0	number of multiallelic SNP sites:	1
# TSTV, transitions/transversions:
# TSTV	[2]id	[3]ts	[4]tv	[5]ts/tv	[6]ts (1st ALT)	[7]tv (1st ALT)	[8]ts/tv (1st ALT)
TSTV	0	238	77	3.09	234	77	3.04
# SiS, Singleton stats:
# SiS	[2]id	[3]allele count	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
SiS	0	1	315	238	77	84	0	0	84
# AF, Stats by non-reference allele frequency:
# AF	[2]id	[3]allele frequency	[4]number of SNPs	[5]number of transitions	[6]number of transversions	[7]number of indels	[8]repeat-consistent	[9]repeat-inconsistent	[10]not applicable
AF	0	0.000000	315	238	77	84	0	0	84
# QUAL, Stats by quality
# QUAL	[2]id	[3]Quality	[4]number of SNPs	[5]number of transitions (1st ALT)	[6]number of transversions (1st ALT)	[7]number of indels
QUAL	0	.	311	234	77	47
# IDD, InDel distribution:
# IDD	[2]id	[3]length (deletions negative)	[4]number of sites	[5]number of genotypes	[6]mean VAF
IDD	0	-60	1	0	.
IDD	0	-42	1	0	.
IDD	0	-21	1	0	.
IDD	0	-12	1	0	.
IDD	0	-10	2	0	.
IDD	0	-9	1	0	.
IDD	0	-8	1	0	.
IDD	0	-6	5	0	.
IDD	0	-5	1	0	.
IDD	0	-4	4	0	.
IDD	0	-3	16	0	.
IDD	0	-2	11	0	.
IDD	0	-1	10	0	.
IDD	0	1	12	0	.
IDD	0	2	9	0	.
IDD	0	3	3	0	.
IDD	0	4	2	0	.
IDD	0	5	1	0	.
IDD	0	6	1	0	.
IDD	0	39	1	0	.
# ST, Substitution types:
# ST	[2]id	[3]type	[4]count
ST	0	A>C	8
ST	0	A>G	54
ST	0	A>T	5
ST	0	C>A	8
ST	0	C>G	13
ST	0	C>T	60
ST	0	G>A	66
ST	0	G>C	19
ST	0	G>T	12
ST	0	T>A	5
ST	0	T>C	58
ST	0	T>G	7
# DP, Depth distribution
# DP	[2]id	[3]bin	[4]number of genotypes	[5]fraction of genotypes (%)	[6]number of sites	[7]fraction of sites (%)
DP	0	313	0	0.000000	1	0.275482
DP	0	410	0	0.000000	1	0.275482
DP	0	412	0	0.000000	1	0.275482
DP	0	430	0	0.000000	1	0.275482
DP	0	439	0	0.000000	1	0.275482
DP	0	457	0	0.000000	1	0.275482
DP	0	492	0	0.000000	1	0.275482
DP	0	499	0	0.000000	1	0.275482
DP	0	>500	0	0.000000	355	97.796143