# Summary table 

Name , Value
Genome , GRCh38.105 
Date , 2026-02-02 21:43
SnpEff_version , SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani
Command_line_arguments , SnpEff  GRCh38.105 -csvStats Sig_18_tissue_vs_Sig_18_Blood.manta.somatic_sv_custom.ann_snpEff.csv Sig_18_tissue_vs_Sig_18_Blood.manta.somatic_sv_custom.ann.vcf.gz 
Warnings , 0 
Number_of_lines_in_input_file, 0
Number_of_variants_before_filter, 0
Number_of_not_variants , 0
Number_of_variants_processed , 0
Number_of_known_variants (i.e. non-empty ID) , 0, 0% 
Number_of_effects , 0 
Genome_total_length ,63147197748 
Genome_effective_length ,0 
Change_rate , 0 

# Change rate by chromosome

Chromosome , Length , Changes , Change_rate 

# Variantss by type

Type , Count , Percent 

# Effects by impact

Type , Count , Percent 

# Effects by functional class

Type , Count , Percent 

Missense_Silent_ratio, 0

# Count by effects

Type , Count , Percent 

# Count by genomic region

Type , Count , Percent 

# Quality 


# InDel lengths


# Base changes

base  , A  , C  , G  , T 
 A  , 0  , 0  , 0  , 0 
 C  , 0  , 0  , 0  , 0 
 G  , 0  , 0  , 0  , 0 
 T  , 0  , 0  , 0  , 0 

# Ts/Tv summary

Transitions , 0
Transversions , 0
Ts_Tv_ratio , 0

# Ts/Tv : All variants

No results available (empty input?)

# Ts/Tv : Known variants

No results available (empty input?)

# Allele frequency

# Allele frequency : All variants

Values , 
Count , 

# Allele Count

Values , 
Count , 

# Hom/Het table



# Codon change table
	
codons 

# Amino acid change table

aa 

# Chromosome change table