# Summary table 

Name , Value
Genome , GRCh38.105 
Date , 2026-02-02 21:45
SnpEff_version , SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani
Command_line_arguments , SnpEff  GRCh38.105 -csvStats Sig_18_tissue_vs_Sig_18_Blood.tiddit_sv_merge_custom.ann_snpEff.csv Sig_18_tissue_vs_Sig_18_Blood.tiddit_sv_merge_custom.ann.vcf.gz 
Warnings , 0 
Number_of_lines_in_input_file, 9
Number_of_variants_before_filter, 9
Number_of_not_variants , 0
Number_of_variants_processed , 9
Number_of_known_variants (i.e. non-empty ID) , 8, 88.888889% 
Number_of_effects , 35 
Genome_total_length ,63147197748 
Genome_effective_length ,46709983 
Change_rate , 5189998 

# Change rate by chromosome

Chromosome , Length , Changes , Change_rate 
21 , 46709983 , 9 , 5189998

# Variantss by type

Type , Count , Percent 
BND , 1 , 11.111111% 
DEL , 1 , 11.111111% 
DUP , 7 , 77.777778% 

# Effects by impact

Type , Count , Percent 
HIGH , 16 , 45.714286% 
MODIFIER , 19 , 54.285714% 

# Effects by functional class

Type , Count , Percent 

Missense_Silent_ratio, 0

# Count by effects

Type , Count , Percent 
bidirectional_gene_fusion , 8 , 20.512821% 
downstream_gene_variant , 3 , 7.692308% 
frameshift_variant , 4 , 10.25641% 
gene_fusion , 8 , 20.512821% 
intragenic_variant , 6 , 15.384615% 
intron_variant , 5 , 12.820513% 
non_coding_transcript_exon_variant , 1 , 2.564103% 
upstream_gene_variant , 4 , 10.25641% 

# Count by genomic region

Type , Count , Percent 
DOWNSTREAM , 3 , 8.571429% 
EXON , 1 , 2.857143% 
GENE , 16 , 45.714286% 
INTRON , 5 , 14.285714% 
TRANSCRIPT , 6 , 17.142857% 
UPSTREAM , 4 , 11.428571% 

# Quality 

Values , 20,35,40,50,80
Count , 1,1,1,2,4

# InDel lengths

Values , 1
Count , 1

# Base changes

base  , A  , C  , G  , T 
 A  , 0  , 0  , 0  , 0 
 C  , 0  , 0  , 0  , 0 
 G  , 0  , 0  , 0  , 0 
 T  , 0  , 0  , 0  , 0 

# Ts/Tv summary

Transitions , 0
Transversions , 0
Ts_Tv_ratio , 0

# Ts/Tv : All variants

No results available (empty input?)

# Ts/Tv : Known variants

No results available (empty input?)

# Allele frequency

# Allele frequency : All variants

Values , 50,100
Count , 2,7

# Allele Count

Values , 1,2,4
Count , 2,6,1

# Hom/Het table

Sample_names , Sig_18_Sig_18_Blood, Sig_18_Sig_18_tissue
Reference , 0, 0
Het , 1, 1
Hom , 5, 3
Missing , 3, 5


# Codon change table
	
codons 

# Amino acid change table

aa 

# Chromosome change table

21, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000
21,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,1,0,2,2,3,0