# Summary table Name , Value Genome , GRCh38.105 Date , 2026-02-02 21:47 SnpEff_version , SnpEff 5.1d (build 2022-04-19 15:49), by Pablo Cingolani Command_line_arguments , SnpEff GRCh38.105 -csvStats Sig_18_tissue_vs_Sig_18_Blood.strelka.somatic_indels_custom.ann_snpEff.csv Sig_18_tissue_vs_Sig_18_Blood.strelka.somatic_indels_custom.ann.vcf.gz Warnings , 13 Number_of_lines_in_input_file, 19 Number_of_variants_before_filter, 19 Number_of_not_variants , 0 Number_of_variants_processed , 19 Number_of_known_variants (i.e. non-empty ID) , 0, 0% Number_of_effects , 27 Genome_total_length ,63147197748 Genome_effective_length ,46709983 Change_rate , 2458420 # Change rate by chromosome Chromosome , Length , Changes , Change_rate 21 , 46709983 , 19 , 2458420 # Variantss by type Type , Count , Percent DEL , 16 , 84.210526% INS , 3 , 15.789474% # Effects by impact Type , Count , Percent HIGH , 10 , 37.037037% MODERATE , 5 , 18.518519% MODIFIER , 12 , 44.444444% # Effects by functional class Type , Count , Percent Missense_Silent_ratio, 0 # Count by effects Type , Count , Percent 3_prime_UTR_variant , 1 , 3.703704% conservative_inframe_deletion , 1 , 3.703704% disruptive_inframe_deletion , 4 , 14.814815% downstream_gene_variant , 4 , 14.814815% frameshift_variant , 10 , 37.037037% intron_variant , 3 , 11.111111% non_coding_transcript_exon_variant , 2 , 7.407407% upstream_gene_variant , 2 , 7.407407% # Count by genomic region Type , Count , Percent DOWNSTREAM , 4 , 14.814815% EXON , 17 , 62.962963% INTRON , 3 , 11.111111% UPSTREAM , 2 , 7.407407% UTR_3_PRIME , 1 , 3.703704% # Quality # InDel lengths Values , 0,1 Count , 3,16 # Base changes base , A , C , G , T A , 0 , 0 , 0 , 0 C , 0 , 0 , 0 , 0 G , 0 , 0 , 0 , 0 T , 0 , 0 , 0 , 0 # Ts/Tv summary Transitions , 0 Transversions , 0 Ts_Tv_ratio , 0 # Ts/Tv : All variants No results available (empty input?) # Ts/Tv : Known variants No results available (empty input?) # Allele frequency # Allele frequency : All variants Values , 0 Count , 19 # Allele Count Values , 0 Count , 19 # Hom/Het table Sample_names , NORMAL, TUMOR Reference , 0, 0 Het , 0, 0 Hom , 0, 0 Missing , 19, 19 # Codon change table codons , - , AAA , AAC , AGG , CCG , CGC , CGG , CTG , GAA , GAG , GAT , GCC , GCG , GGA , TGC , TTC , TTT - , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 AAA , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 AAC , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 AGG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 CCG , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 CGC , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 CGG , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 CTG , 0 , 0 , 0 , 0 , 1 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 GAA , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 GAG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 GAT , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 GCC , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 GCG , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 GGA , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 TGC , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 TTC , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 TTT , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 # Amino acid change table aa , - , ? , A , C , D , E , F , G , K , L , N , P , R - , 0 , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 ? , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 A , 1 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 C , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 D , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 , 0 E , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 F , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 , 0 , 0 G , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 K , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 L , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 1 N , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 1 , 0 , 0 , 0 , 0 P , 3 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 R , 2 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 , 0 # Chromosome change table 21, Position,0,1000000,2000000,3000000,4000000,5000000,6000000,7000000,8000000,9000000,10000000,11000000,12000000,13000000,14000000,15000000,16000000,17000000,18000000,19000000,20000000,21000000,22000000,23000000,24000000,25000000,26000000,27000000,28000000,29000000,30000000,31000000,32000000,33000000,34000000,35000000,36000000,37000000,38000000,39000000,40000000,41000000,42000000,43000000,44000000,45000000,46000000 21,Count,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,1,0,0,1,1,0,1,2,0,1,0,6,0,0,2,1,2