succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 4m 40s 1m 18s 3m 9s 13s 386.7 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) 3m 15s 1m 17s 1m 48s 10s 443.9 MB 100% 3.0 GB 79.7 MB 0 bytes 79.5 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) 1m 18s 1m 16s - - 11.1 MB 101% 9.8 MB 30.0 MB 0 bytes 30.0 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) 1m 14s 1m 7s 2s 5s 11.1 MB 101% 100.1 MB 345.6 MB 0 bytes 345.6 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) 1m 17s 1m 15s - - 10.9 MB 105% 8.3 MB 33.1 MB 0 bytes 33.1 MB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) 1m 20s 1m 14s 3s 3s 10.9 MB 100% 101.6 MB 387.4 MB 0 bytes 387.5 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21.bed) 1m 18s 1m 14s - - 2.9 MB 73% 97.8 KB 49.9 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_chr21) 1m 16s 1m 15s - - 3.2 MB 97% 168.8 KB 21.4 KB 0 bytes 28.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_44120631-44120778) 5s 4s - - 3.2 MB 67% 122.9 KB 7.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr21_5117103-5117231) 5s 4s - - 3.3 MB 60% 154.9 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 1m 31s 1m 23s 6s 2s 150.5 MB 475% 112.6 MB 84.6 KB 0 bytes 96.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 41s 3s 29s 9s 177.9 MB 127% 3.2 GB 494.0 KB 0 bytes 512.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 1m 9s 1m 7s 0s 1s 0 bytes 114% 73.8 KB 1.2 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 25s 23s 0s 1s 16.5 MB 102% 5.3 MB 8.3 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 19s 16s 0s 2s 15.5 MB 104% 3.0 MB 18.0 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 17s 15s 0s 1s 16.4 MB 107% 2.6 MB 7.4 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 4s 2s - - 10.7 MB 76% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_tumor) 6s 3s - - 10.6 MB 87% 170.3 MB 10.9 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_Blood) 4s 2s - - 10.6 MB 93% 84.5 MB 7.7 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 5s 2s - - 10.3 MB 89% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
684 items found |
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