{
  "metadata": {
    "version": "1.0",
    "mode": "variant",
    "tools": [
      "contamination",
      "ngscheckmate",
      "bcftools",
      "snpeff"
    ]
  },
  "pairs": {
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      "tumor_sample": "HCC1395_tumor",
      "normal_sample": "HCC1395_BL",
      "contamination": {
        "normal_contamination_pct": 0.007,
        "tumor_contamination_pct": 0.262
      },
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      },
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          "num_indels": 14,
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          "ts_tv_ratio": 1.33,
          "substitutions": {
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          "num_indels": 25,
          "num_mnps": 6,
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          "substitutions": {
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          },
          "snpeff": {
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            "impact_high": 0,
            "impact_moderate": 0,
            "impact_low": 0,
            "impact_modifier": 0
          }
        }
      }
    },
    "Sig_18_tissue_vs_Sig_18_Blood": {
      "tumor_sample": "Sig_18_tissue",
      "normal_sample": "Sig_18_Blood",
      "contamination": {
        "normal_contamination_pct": 0.026,
        "tumor_contamination_pct": 0.055
      },
      "sample_identity": {
        "tumor_normal_correlation": 0.9901,
        "matched": true
      },
      "callers": {
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          "substitutions": {
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          },
          "snpeff": {
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        },
        "tnseq": {
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          "num_mnps": 5,
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          "substitutions": {
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          },
          "snpeff": {
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            "impact_high": 0,
            "impact_moderate": 0,
            "impact_low": 0,
            "impact_modifier": 0
          }
        }
      }
    }
  }
}