Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:VCF_MERGE_CHARACTERISTICS:MERGE_CHIP_PON (HCC1395_BL) 11s 8s 1s 1s 332.8 MB 1156% 16.6 MB 57.1 KB 0 bytes 64.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (HCC1395_BL) 45s 30s 5s 9s 1.2 GB 266% 207.4 MB 1.3 MB 0 bytes 1.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (HCC1395_BL) 36s 3s 20s 12s 358.1 MB 508% 4.1 GB 288.8 MB 0 bytes 336.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (HCC1395_BL) 26s 4s 13s 9s 610.1 MB 118% 6.0 GB 265.9 KB 0 bytes 268.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (HCC1395_BL) 21s 3s 8s 10s 537.1 MB 183% 3.1 GB 99.0 MB 0 bytes 99.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (HCC1395_BL) 41s 3s 27s 11s 2.8 GB 104% 3.1 GB 6.3 MB 43.4 MB 6.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (HCC1395_BL) 2m 42s 2m 10s 21s 10s 739.9 MB 178% 1.2 GB 8.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 44s 4s 31s 9s 520.8 MB 132% 160.5 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (HCC1395_BL) 51s 12s 27s 12s 3.3 GB 314% 3.2 GB 902.6 KB 2.6 GB 960.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (HCC1395_BL) 45s 13s 22s 10s 498.9 MB 142% 159.7 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (HCC1395_BL) 6s 2s 3s 1s 242.4 MB 342% 95.6 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (HCC1395_BL) 19s 4s 5s 10s 128.8 MB 139% 147.6 MB 68.2 MB 0 bytes 68.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (HCC1395_BL) 5s 3s - - 10.6 MB 109% 68.3 MB 7.1 KB 0 bytes 8.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (HCC1395_BL) 23s 3s 9s 11s 101.7 MB 109% 3.1 GB 283.5 KB 0 bytes 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (HCC1395_BL) 16s 2s 4s 10s 98.0 MB 211% 220.1 MB 106.6 MB 0 bytes 106.7 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (HCC1395_BL) 21s 4s 8s 9s 304.7 MB 107% 3.1 GB 3.6 MB 0 bytes 3.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_GERMLINE_MANTA:MANTA_GERMLINE (HCC1395_BL) 47s 4s 34s 9s 89.0 MB 134% 3.2 GB 3.2 MB 0 bytes 2.7 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (HCC1395_BL) 1m 32s 56s 27s 9s 3.9 GB 149% 4.3 GB 108.2 MB 0 bytes 108.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (HCC1395_BL) 7s 3s 3s 1s 242.4 MB 267% 95.6 MB 710.7 KB 0 bytes 712.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (HCC1395_BL) 6s 2s 2s 2s 249.5 MB 270% 95.4 MB 692.0 KB 0 bytes 700.0 KB 1
55 items found |
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