Clear
Retried
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (Sig_18_tissue) 1m 19s 2s 1m 2s 14s 787.8 MB 459% 7.8 GB 1.7 GB 0 bytes 1.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (Sig_18_tissue) 47s 3s 33s 11s 681.2 MB 144% 6.3 GB 267.5 KB 0 bytes 272.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (Sig_18_tissue) 43s 3s 30s 10s 1.9 GB 119% 3.3 GB 14.8 MB 289.4 MB 14.8 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (Sig_18_tissue) 51s 3s 37s 11s 615.1 MB 206% 3.9 GB 566.5 MB 4.0 KB 567.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 3s 2s 49s 12s 351.3 MB 117% 630.8 MB 3.3 MB 0 bytes 3.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (Sig_18_tissue) 2m 5s 37s 1m 18s 9s 740.7 MB 121% 5.1 GB 9.6 MB 0 bytes 2.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (Sig_18_tissue) 1m 46s 3s 1m 33s 10s 380.4 MB 109% 631.6 MB 3.4 MB 0 bytes 3.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (Sig_18_tissue) 1m 30s 3s 1m 17s 10s 2.5 GB 200% 3.6 GB 896.9 KB 2.0 GB 928.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (Sig_18_tissue) 6s 3s 3s 0s 219.8 MB 344% 95.6 MB 797.4 KB 0 bytes 800.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (Sig_18_tissue) 40s 4s 26s 10s 132.8 MB 152% 756.0 MB 327.0 MB 0 bytes 327.0 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (Sig_18_tissue) 6s 3s - - 10.2 MB 103% 327.2 MB 19.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (Sig_18_tissue) 36s 2s 22s 12s 102.2 MB 128% 3.4 GB 290.7 KB 0 bytes 296.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (Sig_18_tissue) 23s 2s 12s 9s 257.1 MB 141% 3.3 GB 6.4 MB 0 bytes 6.5 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (Sig_18_tissue) 37s 2s 22s 13s 104.3 MB 217% 905.4 MB 532.9 MB 0 bytes 533.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (Sig_18_tissue) 21s 3s 8s 9s 1005.0 MB 221% 310.4 MB 4.4 MB 0 bytes 4.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_FACETS:CONVERT_TUMOR_TO_BAM (Sig_18_tissue) 33s 2s 20s 11s 114.3 MB 217% 905.4 MB 532.9 MB 0 bytes 533.4 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_SOMATIC_MUTECT2:GATHERPILEUPSUMMARIES_TUMOR (Sig_18_tissue) 7s 3s 3s 1s 243.9 MB 280% 95.6 MB 711.3 KB 0 bytes 716.0 KB 1
17 items found