new NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) - - - - - - - - - - 1
new NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:HARMONIZE_CHIP_PON:BCFTOOLS_NORM (chip_pon) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BG5-N1-BDNA-1_2375WFLT3_s29) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BG5-T1-TDNA-1_23FC2GLT4_s29) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BG5-N1-BDNA-1_2375WFLT3_s29) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_TIDDIT:TIDDIT_SV (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_SINGLE_TIDDIT:TIDDIT_SV (1029_BG5-N1-BDNA-1_2375WFLT3_s29) - - - - - - - - - - 1
new NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_SOMATIC_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) - - - - - - - - - - 1
41 items found |
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