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1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21.tnseq.orientation_data.tsv
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s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/69812fed/test_regression_recal_dev_b0193075/variant_calling/tnseq/1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21/1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21_vs_1029_BBCQ-N1-BDNA-1_2375WFLT3_s21.tnseq.orientation_data.tsv
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mipeters-regression-recal-dev-69812fed
Published
Feb 02, 2026 3:25 PM

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#<METADATA>SAMPLE=1029_BBCQ_1029_BBCQ-T1-TDNA-1_23FC2GLT4_s21
context rev_comp f1r2_a f1r2_c f1r2_g f1r2_t f2r1_a f2r1_c f2r1_g f2r1_t hom_ref germline_het somatic_het hom_var num_examples num_alt_examples
AAA TTT 0 1.30552e-06 6.21279e-05 1.74229e-07 0 2.388e-07 1.56901e-05 9.25296e-06 0.998908 2.25468e-06 0.000856888 0.000144271 1429120 5713
AAC GTT 0 7.1112e-07 0.000112135 1.73766e-07 0 2.17932e-07 5.54262e-05 8.12331e-06 0.998546 1.97716e-05 0.000978794 0.000278822 867956 4179
AAG CTT 0 8.72435e-08 0.000362065 1.03001e-06 0 8.75063e-08 0.000328553 0.000172433 0.997949 3.00375e-06 0.000962089 0.000221651 1407108 9522
AAT ATT 0 4.10323e-07 5.17431e-05 1.65689e-07 0 6.39265e-07 9.60096e-06 1.53816e-06 0.998708 1.59986e-05 0.000957497 0.000254528 976474 3886
ACA TGT 0.000267862 0 2.99679e-07 0.00990414 0.000411227 0 2.0572e-07 0.00206797 0.985227 3.10643e-07 0.00189943 0.000221103 1210954 34176
ACC GGT 0.000111259 0 2.37764e-07 0.0102681 0.000292781 0 1.7556e-07 0.00177764 0.985928 2.08155e-06 0.00144301 0.000176454 1007143 27875
ACG CGT 8.2211e-05 0 3.74579e-06 0.024586 0.000262324 0 3.00707e-07 0.00332155 0.965611 0.000403679 0.00447056 0.00125835 429102 23427
ACT AGT 5.23697e-05 0 9.23096e-07 0.00981095 0.0002386 0 1.52261e-07 0.0017344 0.9862 9.23018e-07 0.00166241 0.000299426 977824 25474
AGA TCT 0.00188431 1.07387e-07 0 0.000314923 0.00642187 1.06104e-06 0 0.000179784 0.989871 2.88884e-07 0.00118555 0.000141574 1457962 30291
AGC GCT 0.00159129 1.42174e-07 0 0.000612805 0.01016 1.50651e-06 0 0.00014582 0.986266 1.51027e-06 0.00106072 0.00016011 1432071 39483
AGG CCT 0.00175483 1.01417e-07 0 0.00054468 0.00821938 9.19213e-08 0 0.000602587 0.987668 1.2635e-06 0.00102594 0.000183564 1557004 40553
AGT ACT 0.0017344 1.52261e-07 0 0.0002386 0.00981095 9.23096e-07 0 5.23697e-05 0.9862 9.23018e-07 0.00166241 0.000299426 977824 25474
ATA TAT 2.62274e-05 1.03239e-05 2.96371e-07 0 2.17314e-07 2.96603e-05 1.90801e-07 0 0.998026 2.21107e-05 0.00151072 0.000374415 687145 3374
ATC GAT 7.6827e-06 4.42587e-05 5.12601e-07 0 1.37963e-07 0.000114745 1.38193e-07 0 0.998841 9.44023e-06 0.000792261 0.00018961 988637 4697
ATG CAT 4.51064e-06 3.41274e-05 1.65945e-07 0 9.96969e-08 8.48813e-05 3.07561e-07 0 0.997968 8.91144e-05 0.0013129 0.000505513 1235969 6470
ATT AAT 1.53816e-06 9.60096e-06 6.39265e-07 0 1.65689e-07 5.17431e-05 4.10323e-07 0 0.998708 1.59986e-05 0.000957497 0.000254528 976474 3886
CAA TTG 0 1.38258e-07 0.000180841 1.62392e-06 0 1.12795e-07 0.000116819 4.98844e-05 0.998254 1.05524e-05 0.00109607 0.00029026 1183389 6417
CAC GTG 0 1.68898e-07 0.000134843 3.35408e-07 0 9.91763e-07 8.36626e-05 4.86848e-05 0.998226 3.74017e-05 0.00104017 0.000428239 1237065 7233
CAG CTG 0 7.21649e-08 0.000631601 2.7414e-06 0 2.43755e-07 0.000602857 0.000155215 0.997145 3.17297e-05 0.00104772 0.000382375 2018504 17395
CAT ATG 0 3.07561e-07 8.48813e-05 9.96969e-08 0 1.65945e-07 3.41274e-05 4.51064e-06 0.997968 8.91144e-05 0.0013129 0.000505513 1235969 6470
CCA TGG 0.000971863 0 8.47667e-08 0.00752447 0.00058574 0 1.72435e-07 0.00191338 0.987914 3.27927e-07 0.00097484 0.00011498 1725770 44236
CCC GGG 0.000601264 0 1.21402e-07 0.00907724 0.000460197 0 1.36144e-07 0.00170012 0.986956 4.09328e-06 0.00103974 0.000160835 1377709 37790
CCG CGG 0.000677541 0 9.37748e-07 0.0200123 0.000699114 0 5.92567e-06 0.00264745 0.971468 0.000304701 0.00333739 0.000846844 739524 37423
CCT AGG 0.000602587 0 9.19213e-08 0.00821938 0.00054468 0 1.01417e-07 0.00175483 0.987668 1.2635e-06 0.00102594 0.000183564 1557004 40553
CGA TCG 0.00298655 5.60404e-07 0 0.000589055 0.0222822 3.15203e-07 0 0.000387499 0.970121 9.43099e-05 0.00291132 0.000627495 451420 22240
CGC GCG 0.00386014 4.86073e-06 0 0.000722575 0.0172488 1.18226e-06 0 0.000319764 0.974212 0.000190909 0.00278952 0.000649922 633392 29847
CGG CCG 0.00264745 5.92567e-06 0 0.000699114 0.0200123 9.37748e-07 0 0.000677541 0.971468 0.000304701 0.00333739 0.000846844 739524 37423
CGT ACG 0.00332155 3.00707e-07 0 0.000262324 0.024586 3.74579e-06 0 8.2211e-05 0.965611 0.000403679 0.00447056 0.00125835 429102 23427
CTA TAG 0.000405992 0.000269971 2.44553e-07 0 7.37305e-06 0.000210136 2.06184e-07 0 0.997638 5.458e-06 0.00113308 0.000329181 562028 3914
CTC GAG 0.000205034 0.000406242 1.10194e-07 0 2.03275e-06 0.000483497 9.25719e-08 0 0.998016 4.13354e-06 0.000693976 0.000189152 1458393 11788
CTG CAG 0.000155215 0.000602857 2.43755e-07 0 2.7414e-06 0.000631601 7.21649e-08 0 0.997145 3.17297e-05 0.00104772 0.000382375 2018504 17395
CTT AAG 0.000172433 0.000328553 8.75063e-08 0 1.03001e-06 0.000362065 8.72435e-08 0 0.997949 3.00375e-06 0.000962089 0.000221651 1407108 9522
GAA TTC 0 1.01288e-07 0.000132802 2.04097e-07 0 6.83656e-07 7.24576e-05 2.25819e-05 0.99882 2.37773e-06 0.000794472 0.000153947 1412165 7027
GAC GTC 0 2.10158e-07 0.000219046 3.16825e-07 0 1.00331e-06 0.000124792 1.68672e-05 0.998647 1.29659e-05 0.000724865 0.000253122 927501 5408
GAG CTC 0 9.25719e-08 0.000483497 2.03275e-06 0 1.10194e-07 0.000406242 0.000205034 0.998016 4.13354e-06 0.000693976 0.000189152 1458393 11788
GAT ATC 0 1.38193e-07 0.000114745 1.37963e-07 0 5.12601e-07 4.42587e-05 7.6827e-06 0.998841 9.44023e-06 0.000792261 0.00018961 988637 4697
GCA TGC 0.000597826 0 5.53904e-06 0.0066376 0.000697626 0 1.717e-07 0.00223511 0.988587 5.1223e-07 0.00109442 0.000143848 1363722 33617
GCC GGC 0.000261071 0 8.47412e-06 0.00946053 0.000671654 0 2.35647e-07 0.00190342 0.986613 1.36485e-06 0.000927571 0.000153025 1485075 41209
GCG CGC 0.000319764 0 1.18226e-06 0.0172488 0.000722575 0 4.86073e-06 0.00386014 0.974212 0.000190909 0.00278952 0.000649922 633392 29847
GCT AGC 0.00014582 0 1.50651e-06 0.01016 0.000612805 0 1.42174e-07 0.00159129 0.986266 1.51027e-06 0.00106072 0.00016011 1432071 39483
GGA TCC 0.00185119 1.18092e-07 0 0.000411607 0.00417875 1.40584e-07 0 0.000316371 0.99215 7.84081e-07 0.0009893 0.000101671 1474688 26818
GGC GCC 0.00190342 2.35647e-07 0 0.000671654 0.00946053 8.47412e-06 0 0.000261071 0.986613 1.36485e-06 0.000927571 0.000153025 1485075 41209
GGG CCC 0.00170012 1.36144e-07 0 0.000460197 0.00907724 1.21402e-07 0 0.000601264 0.986956 4.09328e-06 0.00103974 0.000160835 1377709 37790
GGT ACC 0.00177764 1.7556e-07 0 0.000292781 0.0102681 2.37764e-07 0 0.000111259 0.985928 2.08155e-06 0.00144301 0.000176454 1007143 27875
GTA TAC 6.15233e-05 6.21545e-05 1.07341e-06 0 2.51169e-07 8.13392e-05 2.05534e-07 0 0.998225 1.67665e-05 0.0012897 0.000261774 612178 3458
GTC GAC 1.68672e-05 0.000124792 1.00331e-06 0 3.16825e-07 0.000219046 2.10158e-07 0 0.998647 1.29659e-05 0.000724865 0.000253122 927501 5408
GTG CAC 4.86848e-05 8.36626e-05 9.91763e-07 0 3.35408e-07 0.000134843 1.68898e-07 0 0.998226 3.74017e-05 0.00104017 0.000428239 1237065 7233
GTT AAC 8.12331e-06 5.54262e-05 2.17932e-07 0 1.73766e-07 0.000112135 7.1112e-07 0 0.998546 1.97716e-05 0.000978794 0.000278822 867956 4179
TAA TTA 0 1.75891e-07 2.66188e-05 3.61257e-07 0 1.92165e-07 1.27877e-05 8.72238e-05 0.998432 3.97929e-06 0.00120492 0.000231859 656395 3004
TAC GTA 0 2.05534e-07 8.13392e-05 2.51169e-07 0 1.07341e-06 6.21545e-05 6.15233e-05 0.998225 1.67665e-05 0.0012897 0.000261774 612178 3458
TAG CTA 0 2.06184e-07 0.000210136 7.37305e-06 0 2.44553e-07 0.000269971 0.000405992 0.997638 5.458e-06 0.00113308 0.000329181 562028 3914
TAT ATA 0 1.90801e-07 2.96603e-05 2.17314e-07 0 2.96371e-07 1.03239e-05 2.62274e-05 0.998026 2.21107e-05 0.00151072 0.000374415 687145 3374
TCA TGA 0.00076789 0 1.30208e-07 0.00490644 0.000567548 0 1.52447e-07 0.0022016 0.99037 1.90267e-07 0.0010829 0.000103597 1356165 27900
TCC GGA 0.000316371 0 1.40584e-07 0.00417875 0.000411607 0 1.18092e-07 0.00185119 0.99215 7.84081e-07 0.0009893 0.000101671 1474688 26818
TCG CGA 0.000387499 0 3.15203e-07 0.0222822 0.000589055 0 5.60404e-07 0.00298655 0.970121 9.43099e-05 0.00291132 0.000627495 451420 22240
TCT AGA 0.000179784 0 1.06104e-06 0.00642187 0.000314923 0 1.07387e-07 0.00188431 0.989871 2.88884e-07 0.00118555 0.000141574 1457962 30291
TGA TCA 0.0022016 1.52447e-07 0 0.000567548 0.00490644 1.30208e-07 0 0.00076789 0.99037 1.90267e-07 0.0010829 0.000103597 1356165 27900
TGC GCA 0.00223511 1.717e-07 0 0.000697626 0.0066376 5.53904e-06 0 0.000597826 0.988587 5.1223e-07 0.00109442 0.000143848 1363722 33617
TGG CCA 0.00191338 1.72435e-07 0 0.00058574 0.00752447 8.47667e-08 0 0.000971863 0.987914 3.27927e-07 0.00097484 0.00011498 1725770 44236
TGT ACA 0.00206797 2.0572e-07 0 0.000411227 0.00990414 2.99679e-07 0 0.000267862 0.985227 3.10643e-07 0.00189943 0.000221103 1210954 34176
TTA TAA 8.72238e-05 1.27877e-05 1.92165e-07 0 3.61257e-07 2.66188e-05 1.75891e-07 0 0.998432 3.97929e-06 0.00120492 0.000231859 656395 3004
TTC GAA 2.25819e-05 7.24576e-05 6.83656e-07 0 2.04097e-07 0.000132802 1.01288e-07 0 0.99882 2.37773e-06 0.000794472 0.000153947 1412165 7027
TTG CAA 4.98844e-05 0.000116819 1.12795e-07 0 1.62392e-06 0.000180841 1.38258e-07 0 0.998254 1.05524e-05 0.00109607 0.00029026 1183389 6417
TTT AAA 9.25296e-06 1.56901e-05 2.388e-07 0 1.74229e-07 6.21279e-05 1.30552e-06 0 0.998908 2.25468e-06 0.000856888 0.000144271 1429120 5713
66 rows