|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta)
|
2m 40s |
3s |
2m 24s |
13s |
386.9 MB |
101% |
3.0 GB |
1.5 GB |
0 bytes |
1.5 GB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38)
|
1m 59s |
4s |
1m 45s |
10s |
443.6 MB |
101% |
3.0 GB |
79.7 MB |
0 bytes |
79.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip)
|
5s |
3s |
- |
- |
11.1 MB |
98% |
9.8 MB |
30.0 MB |
0 bytes |
30.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip)
|
11s |
4s |
2s |
5s |
11.2 MB |
100% |
100.1 MB |
345.6 MB |
0 bytes |
345.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip)
|
5s |
3s |
- |
- |
11.0 MB |
100% |
8.3 MB |
33.1 MB |
0 bytes |
33.1 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip)
|
11s |
2s |
4s |
5s |
10.8 MB |
51% |
101.6 MB |
387.4 MB |
0 bytes |
387.5 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed)
|
38s |
4s |
- |
- |
5.5 MB |
97% |
4.6 MB |
4.6 MB |
0 bytes |
4.8 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38)
|
5s |
3s |
- |
- |
6.2 MB |
103% |
6.0 MB |
1.7 MB |
0 bytes |
1.7 MB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_120903055-120903232)
|
15s |
14s |
- |
- |
3.3 MB |
120% |
149.1 KB |
16.2 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_46012883-46013026)
|
7s |
5s |
- |
- |
3.3 MB |
119% |
153.6 KB |
18.0 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_73912924-73913098)
|
4s |
3s |
- |
- |
3.3 MB |
119% |
154.9 KB |
18.3 KB |
0 bytes |
24.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_7727703-7727828)
|
3s |
2s |
- |
- |
3.3 MB |
123% |
154.7 KB |
19.1 KB |
0 bytes |
24.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr10_98211307-98211348)
|
4s |
3s |
- |
- |
3.2 MB |
153% |
164.4 KB |
20.5 KB |
0 bytes |
28.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_100961684-100961768)
|
18s |
17s |
- |
- |
3.3 MB |
113% |
155.8 KB |
17.6 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_119116045-119116256)
|
4s |
3s |
- |
- |
3.2 MB |
88% |
151.9 KB |
17.7 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_113968442-113968648)
|
5s |
3s |
- |
- |
3.2 MB |
122% |
155.0 KB |
17.5 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_1449776-1449836)
|
4s |
3s |
- |
- |
3.3 MB |
84% |
142.2 KB |
15.3 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_14859043-14859246)
|
29s |
28s |
- |
- |
3.2 MB |
130% |
159.4 KB |
19.2 KB |
0 bytes |
24.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_12460201-12460396)
|
6s |
4s |
- |
- |
3.3 MB |
91% |
151.6 KB |
16.7 KB |
0 bytes |
20.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr11_47732537-47732670)
|
7s |
6s |
- |
- |
3.3 MB |
106% |
143.9 KB |
14.5 KB |
0 bytes |
20.0 KB |
1 |