succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_143580506-143580727) 5s 3s - - 3.3 MB 51% 146.4 KB 16.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_32654636-32659075) 4s 3s - - 3.3 MB 117% 131.9 KB 11.6 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_52676369-52676571) 3s 2s - - 3.2 MB 125% 152.3 KB 19.3 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr8_8786022-8786055) 3s 2s - - 3.3 MB 120% 146.5 KB 16.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_116344543-116344711) 6s 5s - - 3.2 MB 130% 161.6 KB 19.7 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_132331052-132331139) 5s 4s - - 3.3 MB 91% 161.0 KB 19.2 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_19336270-19336414) 6s 5s - - 3.3 MB 126% 144.9 KB 15.5 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_69225304-69225407) 5s 4s - - 3.2 MB 109% 136.6 KB 13.8 KB 0 bytes 16.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr9_93229696-93229868) 5s 4s - - 3.3 MB 112% 154.1 KB 18.6 KB 0 bytes 24.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_100820417-100820474) 4s 3s - - 3.3 MB 108% 148.3 KB 16.9 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_130019590-130019709) 4s 3s - - 3.3 MB 64% 151.5 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_35802197-35803171) 4s 3s - - 3.1 MB 97% 150.1 KB 16.7 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrX_54924451-54924555) 5s 4s - - 3.3 MB 73% 139.8 KB 14.8 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chrY_305074-305197) 8s 6s - - 3.2 MB 113% 119.1 KB 8.2 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 25s 16s 7s 2s 259.7 MB 419% 117.2 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 16s 13s 55s 8s 274.3 MB 118% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 5s 4s 0s 0s 0 bytes 121% 109.2 KB 1.9 KB 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 16s 14s 0s 1s 16.3 MB 100% 2.9 MB 10.3 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_BBCQ-N1-BDNA-1_2375WFLT3_s21) 10s 3s 6s 1s 449.2 MB 231% 97.1 MB 699.4 KB 0 bytes 700.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CHIP_DETECTION:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (1029_BG5-N1-BDNA-1_2375WFLT3_s29) 9s 2s 6s 1s 632.2 MB 225% 97.0 MB 698.7 KB 0 bytes 700.0 KB 1
2908 items found |
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