succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 2m 4s 2s 1m 47s 15s 386.9 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 7s 3s - - 5.3 MB 95% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 6s 4s - - 6.0 MB 103% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 5s 3s - - 6.2 MB 103% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 4s 2s - - 6.3 MB 96% 2.1 MB 595.3 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 4s 3s - - 3.2 MB 137% 348.2 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 4s 3s - - 6.2 MB 109% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 10s 2s 6s 2s 260.3 MB 599% 117.1 MB 1.4 MB 0 bytes 1.4 MB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 1m 16s 14s 53s 9s 274.2 MB 116% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 137% 72.0 KB 610 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 17s 16s 0s 0s 15.1 MB 106% 2.8 MB 2.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 48s 44s 0s 3s 16.7 MB 109% 2.8 MB 13.3 KB 0 bytes 20.0 KB 3
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 11s 9s 0s 1s 17.2 MB 104% 2.4 MB 873 bytes 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 43s 9s 3s 31s 11.0 MB 100% 11.6 GB 479.5 KB 0 bytes 480.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 34m 31s 11s 33m 19s 1m 1s 1.8 GB 152% 22.6 GB 11.6 GB 19.5 GB 11.6 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 29m 12s 2s 28m 35s 35s 1.4 GB 105% 3.6 GB 5.9 GB 0 bytes 5.9 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 24m 17s 3s 23m 42s 32s 1.9 GB 104% 4.3 GB 5.9 GB 0 bytes 5.9 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 4m 25s 3s 3m 42s 40s 1.7 GB 111% 932.0 MB 923.0 MB 0 bytes 923.2 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 1h 14m 10s 1h 14m 42s 1.6 GB 105% 4.0 GB 6.4 GB 0 bytes 6.4 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 17m 4s 2s 16m 44s 18s 2.3 GB 107% 4.1 GB 815.2 KB 79.6 MB 824.0 KB 1
161 items found |
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