succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 6m 52s 9s 6m 19s 24s 1.1 GB 116% 913.8 MB 808.3 KB 14.2 MB 824.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 40m 21s 9s 39m 50s 22s 1.9 GB 107% 5.0 GB 830.3 KB 2.2 GB 824.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 17m 4s 2s 16m 44s 18s 2.3 GB 107% 4.1 GB 815.2 KB 79.6 MB 824.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 8s 3s 3s 2s 422.8 MB 356% 96.0 MB 800.3 KB 0 bytes 804.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_CONTAMINATION_ANALYSIS:CONPAIR_PILEUP (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 8m 43s 1m 13s 6m 56s 33s 2.1 GB 120% 10.0 GB 91.5 MB 0 bytes 91.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 29m 39s 2s 28m 59s 38s 1.0 GB 102% 14.4 GB 15.9 MB 14.5 GB 15.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 50m 28s 3s 49m 49s 36s 1.4 GB 137% 14.5 GB 20.9 MB 15.9 GB 20.9 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 25m 43s 3s 25m 5s 35s 2.0 GB 143% 14.5 GB 20.8 MB 16.4 GB 20.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 21m 35s 2s 20m 54s 39s 982.5 MB 102% 14.4 GB 15.8 MB 14.4 GB 15.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 31m 19s 9s 30m 29s 41s 1.1 GB 103% 14.4 GB 15.5 MB 14.3 GB 15.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 49m 36s 2s 48m 58s 36s 1.6 GB 149% 14.5 GB 27.9 MB 16.2 GB 27.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 32m 2s 2s 31m 22s 38s 1.9 GB 167% 14.5 GB 22.6 MB 16.5 GB 22.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 36m 19s 2s 35m 37s 40s 1.3 GB 149% 14.5 GB 20.6 MB 16.1 GB 20.5 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTHSMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 49m 49s 8s 48m 58s 43s 1.1 GB 102% 14.4 GB 15.8 MB 14.4 GB 15.8 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:BAM_QC_PICARD:PICARD_COLLECTMULTIPLEMETRICS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 23m 16s 3s 22m 37s 36s 1.3 GB 108% 17.4 GB 969.3 KB 17.3 GB 940.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 3m 11s 2s 2m 48s 21s 2.0 GB 191% 9.3 GB 723.0 MB 9.3 GB 723.1 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 11m 21s 2s 10m 57s 22s 285.0 MB 156% 12.3 GB 285.0 KB 10.9 GB 288.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 1h 34m 2s 1h 33m 36s 6.3 GB 107% 427.7 GB 1.2 GB 0 bytes 205.3 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 17m 11s 2s 16m 1s 1m 7s 2.6 GB 597% 76.5 GB 41.7 GB 2.0 GB 41.7 GB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_GERMLINE_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (1029_BO4Y-N1-BDNA-1_2375WFLT3_s41) 53m 36s 1m 24s 51m 4s 1m 8s 1.2 GB 201% 180.9 GB 18.1 GB 25.7 MB 18.1 GB 3
161 items found |
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