succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 2m 34s 4s 2m 16s 14s 387.0 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 2m 34s 4s 2m 16s 14s 387.0 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 8s 5s 1s 2s 5.4 MB 97% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 8s 5s 1s 2s 5.4 MB 97% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 6s 5s 1s 0s 6.2 MB 102% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 6s 5s 1s 0s 6.2 MB 102% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 7s 5s - - 6.2 MB 111% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 7s 5s - - 6.2 MB 111% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 5s 3s - - 6.1 MB 118% 2.1 MB 595.2 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 5s 3s - - 6.1 MB 118% 2.1 MB 595.2 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 6s 4s - - 3.2 MB 121% 353.2 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 6s 4s - - 3.2 MB 121% 353.2 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 6s 4s - - 6.1 MB 109% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 6s 4s - - 6.1 MB 109% 2.0 MB 566.8 KB 0 bytes 572.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 102% 125.2 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 102% 125.2 KB 17.3 KB 0 bytes 20.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 1m 5s 49s 3s 12s 29.8 MB 102% 36.2 MB 100.2 KB 0 bytes 100.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 1m 5s 49s 3s 12s 29.8 MB 102% 36.2 MB 100.2 KB 0 bytes 100.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_032-T1-TDNA-1_23FC2GLT4_s01) 1m 52s 3s 11s 1m 38s 13.0 MB 95% 34.6 GB 1.6 MB 34.6 GB 1.6 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_05O-T1-TDNA-1_23FC2GLT4_s02) 1m 8s 3s 20s 45s 12.8 MB 26% 19.2 GB 759.6 KB 19.2 GB 760.0 KB 1
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