NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_032-T1-TDNA-1_23FC2GLT4_s01) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_032-T1-TDNA-1_23FC2GLT4_s01)

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Task Info

Status: succeeded
Hash: 350fd57a82c3
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_032-T1-TDNA-1_23FC2GLT4_s01
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 61/370c04
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/61/370c0418937c6ca59ce38828fb8d57
Native ID: nf-61370c0418937c6ca59ce38828fb8d57-80f14

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.0 MB / 12.0 GB
Process I/O (rchar / wchar): 34.6 GB / 1.6 MB
Disk I/O (read / write): 34.6 GB / 1.6 MB
Host: i-05b07062146f2ca2a ( on-demand)

Runtime

Submitted: Jan 27, 2026 6:44:26 AM
Completed: Jan 27, 2026 6:46:19 AM
Total Duration: 1m 52s

Phases

Queue: 3s
Execution: 11s
Stage/Unstage: 1m 38s

Attempt 1

Execution

Status: succeeded
Hash: f6/e2b0bf
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f6/e2b0bf0ac7ccad1342057184aafe13
Native ID: nf-f6e2b0bf0ac7ccad1342057184aafe13-872f8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.8 MB / 12.0 GB
Process I/O (rchar / wchar): 37.6 GB / 1.6 MB
Disk I/O (read / write): 32.4 GB / 1.6 MB
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 11:10:43 AM
Completed: Jan 24, 2026 11:12:35 AM
Total Duration: 1m 51s

Phases

Queue: 2s
Execution: 9s
Stage/Unstage: 1m 40s