NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_0DT-T1-TDNA-1_23FC2GLT4_s03) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_0DT-T1-TDNA-1_23FC2GLT4_s03)

Login

Task Info

Status: succeeded
Hash: 7b365c81fb24
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_0DT-T1-TDNA-1_23FC2GLT4_s03
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 12/2f49bb
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/2f49bb42f67977ddba5e14b97fb4ed
Native ID: nf-122f49bb42f67977ddba5e14b97fb4ed-12434

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 12.8 MB / 12.0 GB
Process I/O (rchar / wchar): 32.0 GB / 1.4 MB
Disk I/O (read / write): 32.0 GB / 1.4 MB
Host: i-05b07062146f2ca2a ( on-demand)

Runtime

Submitted: Jan 27, 2026 6:15:36 AM
Completed: Jan 27, 2026 6:17:24 AM
Total Duration: 1m 47s

Phases

Queue: 3s
Execution: 9s
Stage/Unstage: 1m 35s

Attempt 1

Execution

Status: succeeded
Hash: 5e/558b8d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/558b8dca4f42fd7ce851cedbd88b30
Native ID: nf-5e558b8dca4f42fd7ce851cedbd88b30-f7ffd

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.6 MB / 12.0 GB
Process I/O (rchar / wchar): 39.3 GB / 1.9 MB
Disk I/O (read / write): 34.6 GB / 1.9 MB
Host: i-0b980340d793f251f ( on-demand)

Runtime

Submitted: Jan 24, 2026 10:53:12 AM
Completed: Jan 24, 2026 10:55:03 AM
Total Duration: 1m 50s

Phases

Queue: 2s
Execution: 9s
Stage/Unstage: 1m 39s