NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_8AV-T1-TDNA-1_23FC2GLT4_s17) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_8AV-T1-TDNA-1_23FC2GLT4_s17)

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Task Info

Status: succeeded
Hash: b2fc778b6cfd
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_8AV-T1-TDNA-1_23FC2GLT4_s17
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 6f/fb1f22
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/fb1f2225b4b51ae752267758d8cea3
Native ID: nf-6ffb1f2225b4b51ae752267758d8cea3-1d2d4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.9 MB / 12.0 GB
Process I/O (rchar / wchar): 46.5 GB / 1.9 MB
Disk I/O (read / write): 46.5 GB / 1.9 MB
Host: i-06c3e66f26e9208da ( on-demand)

Runtime

Submitted: Jan 27, 2026 7:10:55 AM
Completed: Jan 27, 2026 7:13:36 AM
Total Duration: 2m 40s

Phases

Queue: 2s
Execution: 12s
Stage/Unstage: 2m 26s

Attempt 1

Execution

Status: succeeded
Hash: 82/6e865d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/6e865d9802e4c84ffd2dff4d9ca053
Native ID: nf-826e865d9802e4c84ffd2dff4d9ca053-1c144

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 15.3 MB / 12.0 GB
Process I/O (rchar / wchar): 39.7 GB / 1.6 MB
Disk I/O (read / write): 35.1 GB / 1.6 MB
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 11:42:53 AM
Completed: Jan 24, 2026 11:44:45 AM
Total Duration: 1m 51s

Phases

Queue: 2s
Execution: 10s
Stage/Unstage: 1m 39s