NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_8OI-T1-TDNA-1_23FC2GLT4_s19) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_8OI-T1-TDNA-1_23FC2GLT4_s19)

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Task Info

Status: succeeded
Hash: cec7eef25b67
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_8OI-T1-TDNA-1_23FC2GLT4_s19
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 15/65da15
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/65da1524b8e208e3d630fe25e67583
Native ID: nf-1565da1524b8e208e3d630fe25e67583-1a4eb

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.5 MB / 12.0 GB
Process I/O (rchar / wchar): 32.6 GB / 1.7 MB
Disk I/O (read / write): 32.6 GB / 1.7 MB
Host: i-06c3e66f26e9208da ( on-demand)

Runtime

Submitted: Jan 27, 2026 6:01:26 AM
Completed: Jan 27, 2026 6:03:14 AM
Total Duration: 1m 47s

Phases

Queue: 3s
Execution: 10s
Stage/Unstage: 1m 34s

Attempt 1

Execution

Status: succeeded
Hash: 44/c33e12
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/44/c33e1218d62aa29234b9baaed74eec
Native ID: nf-44c33e1218d62aa29234b9baaed74eec-360c5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.8 / 2
Memory (peak / alloc): 13.1 MB / 12.0 GB
Process I/O (rchar / wchar): 33.7 GB / 1.5 MB
Disk I/O (read / write): 33.7 GB / 1.5 MB
Host: i-0d1c8a3aabd084152 ( on-demand)

Runtime

Submitted: Jan 24, 2026 10:49:32 AM
Completed: Jan 24, 2026 10:51:14 AM
Total Duration: 1m 41s

Phases

Queue: 3s
Execution: 11s
Stage/Unstage: 1m 27s