NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_1G0-T1-TDNA-1_23FC2GLT4_s05) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_1G0-T1-TDNA-1_23FC2GLT4_s05)

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Task Info

Status: succeeded
Hash: dda8875a2dae
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_1G0-T1-TDNA-1_23FC2GLT4_s05
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 40/24ac08
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/40/24ac0861fef8a8d5e41d1b56b889b2
Native ID: nf-4024ac0861fef8a8d5e41d1b56b889b2-97074

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 0.9 / 2
Memory (peak / alloc): 13.7 MB / 12.0 GB
Process I/O (rchar / wchar): 39.3 GB / 1.9 MB
Disk I/O (read / write): 39.3 GB / 1.9 MB
Host: i-06c3e66f26e9208da ( on-demand)

Runtime

Submitted: Jan 27, 2026 7:56:55 AM
Completed: Jan 27, 2026 7:58:54 AM
Total Duration: 1m 58s

Phases

Queue: 3s
Execution: 11s
Stage/Unstage: 1m 44s

Attempt 1

Execution

Status: succeeded
Hash: 2c/aa611a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2c/aa611a6be59e6452134c7de094c323
Native ID: nf-2caa611a6be59e6452134c7de094c323-d792c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.5 MB / 12.0 GB
Process I/O (rchar / wchar): 38.0 GB / 1.7 MB
Disk I/O (read / write): 33.0 GB / 1.7 MB
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 1:02:11 PM
Completed: Jan 24, 2026 1:04:07 PM
Total Duration: 1m 55s

Phases

Queue: 3s
Execution: 10s
Stage/Unstage: 1m 42s