NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (1029_3N0-T1-TDNA-1_23FC2GLT4_s09) - mipeters-sarek-B23FC2GLT4-2026-01-26_17-04-31z - Workflow Tracker

Runs
mipeters-sar..6_17-04-31z
Tasks
INDEX_CRAM (1029_3N0-T1-TDNA-1_23FC2GLT4_s09)

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Task Info

Status: succeeded
Hash: fb44e47537db
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM
Tag: 1029_3N0-T1-TDNA-1_23FC2GLT4_s09
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: c2/bf3aa5
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c2/bf3aa51406fbbaf178c9518b824ede
Native ID: nf-c2bf3aa51406fbbaf178c9518b824ede-7d161

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.6 MB / 12.0 GB
Process I/O (rchar / wchar): 38.7 GB / 1.9 MB
Disk I/O (read / write): 38.7 GB / 1.9 MB
Host: i-02ff0a84e42be86d2 ( on-demand)

Runtime

Submitted: Jan 27, 2026 7:10:35 AM
Completed: Jan 27, 2026 7:12:50 AM
Total Duration: 2m 14s

Phases

Queue: 1s
Execution: 10s
Stage/Unstage: 2m 3s

Attempt 1

Execution

Status: succeeded
Hash: 85/19f829
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/samtools:1.21--h50ea8bc_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/85/19f8290081afd8c1432982def0d827
Native ID: nf-8519f8290081afd8c1432982def0d827-1fe0f

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 2
Memory (peak / alloc): 13.1 MB / 12.0 GB
Process I/O (rchar / wchar): 34.6 GB / 1.6 MB
Disk I/O (read / write): 34.5 GB / 1.6 MB
Host: i-050e6ef32129af574 ( on-demand)

Runtime

Submitted: Jan 24, 2026 11:31:32 AM
Completed: Jan 24, 2026 11:33:14 AM
Total Duration: 1m 41s

Phases

Queue: 2s
Execution: 9s
Stage/Unstage: 1m 30s