succeeded NFCORE_SAREK:PREPARE_GENOME:MSISENSOR2_SCAN (Homo_sapiens_assembly38.fasta) 2m 34s 5s 2m 15s 14s 387.0 MB 100% 3.0 GB 1.5 GB 0 bytes 1.5 GB 1
new NFCORE_SAREK:PREPARE_GENOME:MSISENSORPRO_SCAN (Homo_sapiens_assembly38) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_ALLELES (G1000_alleles_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_GC (GC_G1000_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_LOCI (G1000_loci_hg38.zip) - - - - - - - - - - 1
new NFCORE_SAREK:PREPARE_GENOME:UNZIP_RT (RT_G1000_hg38.zip) - - - - - - - - - - 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:CREATE_INTERVALS_BED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38.bed) 9s 5s - - 5.3 MB 99% 4.6 MB 4.6 MB 0 bytes 4.6 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_COMBINED (xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38) 7s 5s - - 6.2 MB 104% 6.0 MB 1.7 MB 0 bytes 1.7 MB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr12_122788758-122788929) 7s 6s - - 6.2 MB 99% 2.0 MB 535.6 KB 0 bytes 540.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr1_69091-70008) 6s 4s - - 6.0 MB 111% 2.1 MB 595.3 KB 0 bytes 600.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr22_46626800-46626961) 8s 6s - - 3.1 MB 99% 354.4 KB 77.4 KB 0 bytes 84.0 KB 1
succeeded NFCORE_SAREK:PREPARE_INTERVALS:TABIX_BGZIPTABIX_INTERVAL_SPLIT (chr6_29306690-29307655) 9s 7s - - 6.0 MB 103% 2.0 MB 566.8 KB 0 bytes 576.0 KB 1
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_ANTITARGET (intervals) 22s 14s 6s 2s 260.7 MB 597% 117.1 MB 1.4 MB 0 bytes 1.4 MB 2
succeeded NFCORE_SAREK:PREPARE_REFERENCE_CNVKIT:CNVKIT_REFERENCE (Homo_sapiens_assembly38.fasta) 58s 2s 47s 9s 273.6 MB 161% 5.9 GB 10.5 MB 0 bytes 10.5 MB 1
succeeded NFCORE_SAREK:PUBLISH_INPUT_SAMPLESHEET (input_samplesheet) 6s 4s 0s 1s 0 bytes 96% 108.6 KB 646 bytes 0 bytes 4.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_FASTQ_QC (fastq_qc_aggregation) 17s 15s 0s 1s 19.6 MB 99% 3.1 MB 2.7 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:AGGREGATE_POSTDEDUP_QC (postdedup_qc_aggregation) 51s 46s 0s 4s 17.1 MB 106% 2.9 MB 13.6 KB 0 bytes 20.0 KB 2
succeeded NFCORE_SAREK:SAREK:AGGREGATE_VARIANT_QC (variant_qc_aggregation) 46s 43s 0s 2s 18.2 MB 109% 2.4 MB 1.9 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:INDEX_CRAM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 3m 31s 11s 56s 2m 24s 14.7 MB 61% 57.7 GB 2.6 MB 57.7 GB 2.6 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_APPLYBQSR:CRAM_MERGE_INDEX_SAMTOOLS:MERGE_CRAM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 2h 50m 9s 2h 45m 5m 38s 1.6 GB 159% 124.3 GB 57.7 GB 124.4 GB 57.7 GB 2
152 items found |
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