NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GATK4_BASERECALIBRATOR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: 05849ed219cb
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_BASERECALIBRATOR
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 26/25df25
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/26/25df25b27545d3b74ee01aaa4bab92
Native ID: nf-2625df25b27545d3b74ee01aaa4bab92-d199e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 4
Memory (peak / alloc): 2.0 GB / 24.0 GB
Process I/O (rchar / wchar): 16.6 GB / 916.6 KB
Disk I/O (read / write): 16.7 GB / 824.0 KB
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 9:21:20 AM
Completed: Jan 26, 2026 12:14:37 PM
Total Duration: 2h 53m

Phases

Queue: 9s
Execution: 2h 50m
Stage/Unstage: 2m 36s

Attempt 3

Execution

Status: failed
Hash: 2d/ffced2
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/ffced217b8391e5875fffb1745fa51
Native ID: nf-2dffced217b8391e5875fffb1745fa51-f2a2c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 9:18:05 AM
Completed: Jan 26, 2026 9:21:12 AM
Total Duration: 3m 6s

Phases

Queue: 10s
Execution: 2m 56s
Stage/Unstage: 0s

Attempt 2

Execution

Status: succeeded
Hash: c5/7c65a2
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c5/7c65a2f57d71b0752cce40f7af8f44
Native ID: nf-c57c65a2f57d71b0752cce40f7af8f44-af2c1

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 4
Memory (peak / alloc): 1.8 GB / 24.0 GB
Process I/O (rchar / wchar): 16.6 GB / 862.2 KB
Disk I/O (read / write): 16.5 GB / 824.0 KB
Host: i-0ef2bdb292ac61e8a ( on-demand)

Runtime

Submitted: Jan 23, 2026 2:14:13 PM
Completed: Jan 23, 2026 3:43:22 PM
Total Duration: 1h 29m

Phases

Queue: 3s
Execution: 1h 26m
Stage/Unstage: 2m 12s

Attempt 1

Execution

Status: failed
Hash: 47/1f10bf
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/1f10bf25689d241e548f8f4e7c75c0
Native ID: nf-471f10bf25689d241e548f8f4e7c75c0-486fc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0d1ca7965e67ffe6d ( on-demand)

Runtime

Submitted: Jan 23, 2026 2:10:36 PM
Completed: Jan 23, 2026 2:14:06 PM
Total Duration: 3m 29s

Phases

Queue: 9s
Execution: 3m 20s
Stage/Unstage: 0s