NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

Login

Task Info

Status: succeeded
Hash: 113ba84ea25d
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 2d/e15ad1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2d/e15ad1862d5f785f4c1d7f135b9eb8
Native ID: nf-2de15ad1862d5f785f4c1d7f135b9eb8-6924a

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 12
Memory (peak / alloc): 1.2 GB / 72.0 GB
Process I/O (rchar / wchar): 2.6 GB / 4.8 GB
Disk I/O (read / write): - / 4.8 GB
Host: i-0635967ae6a2c477a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:35:50 PM
Completed: Jan 26, 2026 1:23:29 PM
Total Duration: 47m 38s

Phases

Queue: 1m 5s
Execution: 42m 10s
Stage/Unstage: 4m 23s

Attempt 3

Execution

Status: failed
Hash: 81/f55b5d
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/81/f55b5d79f9ae9c17bac544f9f4fa75
Native ID: nf-81f55b5d79f9ae9c17bac544f9f4fa75-77292

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-035097f9565904857 ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:27:31 PM
Completed: Jan 26, 2026 12:35:07 PM
Total Duration: 7m 35s

Phases

Queue: 1m 9s
Execution: 6m 26s
Stage/Unstage: 0s

Attempt 2

Execution

Status: succeeded
Hash: a4/f84256
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/f842564eef5336797907ba9a6e5d08
Native ID: nf-a4f842564eef5336797907ba9a6e5d08-31fd4

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 12
Memory (peak / alloc): 1.5 GB / 72.0 GB
Process I/O (rchar / wchar): 2.6 GB / 4.8 GB
Disk I/O (read / write): - / 4.8 GB
Host: i-096914bef70df7a23 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:09:33 PM
Completed: Jan 23, 2026 5:31:56 PM
Total Duration: 22m 22s

Phases

Queue: 3s
Execution: 18m 9s
Stage/Unstage: 4m 10s

Attempt 1

Execution

Status: failed
Hash: 62/20acee
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/20acee01385e49e4228b633225a6eb
Native ID: nf-6220acee01385e49e4228b633225a6eb-2f793

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-096914bef70df7a23 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:07:04 PM
Completed: Jan 23, 2026 5:09:29 PM
Total Duration: 2m 24s

Phases

Queue: 3s
Execution: 2m 21s
Stage/Unstage: 0s