NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: 1a1b216be549
Process: NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 6a/8d4d1a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/8d4d1a549e495f97b0de4faf610645
Native ID: nf-6a8d4d1a549e495f97b0de4faf610645-20e7c

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 2
Memory (peak / alloc): 1.5 GB / 12.0 GB
Process I/O (rchar / wchar): 19.3 GB / 1.2 MB
Disk I/O (read / write): 19.4 GB / 1.2 MB
Host: i-00d6e35f74d7f7e4a ( on-demand)

Runtime

Submitted: Jan 26, 2026 9:53:33 PM
Completed: Jan 26, 2026 10:56:44 PM
Total Duration: 1h 3m

Phases

Queue: 22s
Execution: 1h 0m
Stage/Unstage: 2m 14s

Attempt 1

Execution

Status: aborted
Hash: 20/0b9700
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/0b97009b40630e80051d591ba02e1a
Native ID: nf-200b97009b40630e80051d591ba02e1a-16f91

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 2
Memory (peak / alloc): - / 12.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-01b87be0cebbbdbe9 ( on-demand)

Runtime

Submitted: Jan 24, 2026 2:05:27 AM
Completed: Jan 24, 2026 2:15:47 AM
Total Duration: -

Phases

Queue: 27s
Execution: -
Stage/Unstage: -