NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GATK4_GATHERBQSRREPORTS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: 4bb26fa35ca7
Process: NFCORE_SAREK:SAREK:BAM_BASERECALIBRATOR:GATK4_GATHERBQSRREPORTS
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 2

Attempt 2

Execution

Status: succeeded
Hash: 0a/903b74
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0a/903b74c825ecf1465f72a9903c7190
Native ID: nf-0a903b74c825ecf1465f72a9903c7190-75a89

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.4 / 6
Memory (peak / alloc): 495.7 MB / 36.0 GB
Process I/O (rchar / wchar): 95.9 MB / 801.3 KB
Disk I/O (read / write): - / 804.0 KB
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:27:10 PM
Completed: Jan 26, 2026 12:27:29 PM
Total Duration: 18s

Phases

Queue: 10s
Execution: 6s
Stage/Unstage: 2s

Attempt 1

Execution

Status: succeeded
Hash: 4e/0fc75f
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4e/0fc75f7000f38f469e33d11dee07f4
Native ID: nf-4e0fc75f7000f38f469e33d11dee07f4-ed84e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 3.5 / 6
Memory (peak / alloc): 529.1 MB / 36.0 GB
Process I/O (rchar / wchar): 95.9 MB / 801.3 KB
Disk I/O (read / write): - / 804.0 KB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:06:34 PM
Completed: Jan 23, 2026 5:06:53 PM
Total Duration: 18s

Phases

Queue: 9s
Execution: 6s
Stage/Unstage: 3s