NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: aborted
Hash: 6787bde23488
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 4

Attempt 4

Execution

Status: aborted
Hash: dc/410d18
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/410d18bab3a54aee264c5ef9056c46
Native ID: nf-dc410d18bab3a54aee264c5ef9056c46-3f700

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 12
Memory (peak / alloc): 2.0 GB / 72.0 GB
Process I/O (rchar / wchar): 15.9 GB / 36.0 GB
Disk I/O (read / write): 10.9 GB / 36.1 GB
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:31:10 PM
Completed: Jan 26, 2026 6:58:49 PM
Total Duration: 6h 27m

Phases

Queue: 9s
Execution: 6h 23m
Stage/Unstage: 4m 27s

Attempt 3

Execution

Status: failed
Hash: a8/1b6d0d
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a8/1b6d0d92140bc147e67885b55bbec0
Native ID: nf-a81b6d0d92140bc147e67885b55bbec0-1de67

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:27:31 PM
Completed: Jan 26, 2026 12:31:10 PM
Total Duration: 3m 39s

Phases

Queue: 3m 39s
Execution: -
Stage/Unstage: -

Attempt 2

Execution

Status: aborted
Hash: ed/4a94a1
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ed/4a94a15b0a8f35c4333332686cd281
Native ID: nf-ed4a94a15b0a8f35c4333332686cd281-dbee5

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 12
Memory (peak / alloc): 3.4 GB / 72.0 GB
Process I/O (rchar / wchar): 15.9 GB / 36.0 GB
Disk I/O (read / write): 12.1 GB / 36.1 GB
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:10:23 PM
Completed: Jan 24, 2026 12:22:17 AM
Total Duration: 7h 11m

Phases

Queue: 11s
Execution: 7h 7m
Stage/Unstage: 4m 40s

Attempt 1

Execution

Status: failed
Hash: ca/82da0a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ca/82da0a4e74538e2c5e4ed0e1f2a423
Native ID: nf-ca82da0a4e74538e2c5e4ed0e1f2a423-6a2c8

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0573fe75ad2999756 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:07:04 PM
Completed: Jan 23, 2026 5:10:23 PM
Total Duration: 3m 19s

Phases

Queue: 3m 19s
Execution: -
Stage/Unstage: -