|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:MOSDEPTH (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
15m 0s |
9s |
12m 56s |
1m 55s |
2.0 GB |
274% |
51.5 GB |
1.4 GB |
51.5 GB |
1.4 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:CRAM_QC_MOSDEPTH_SAMTOOLS:SAMTOOLS_STATS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
2h 35m |
16s |
2h 31m |
3m 27s |
315.2 MB |
157% |
54.6 GB |
290.3 KB |
53.8 GB |
296.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_POSTDUPLICATES_QC:SEQTOOL_QC (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
10h 9m |
31s |
10h 5m |
3m 50s |
4.3 GB |
101% |
2.7 TB |
1.6 GB |
1.4 TB |
265.9 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_SENTIEON_DEDUP:SENTIEON_DEDUP (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
2h 19m |
6s |
2h 11m |
7m 25s |
9.7 GB |
599% |
490.4 GB |
289.5 GB |
388.2 GB |
289.6 GB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_CNVKIT:CNVKIT_BATCH (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
1h 53m |
14s |
1h 51m |
2m 14s |
1.0 GB |
201% |
559.6 GB |
90.0 GB |
281.0 GB |
90.0 GB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_SINGLE_TIDDIT:TABIX_BGZIP_TIDDIT_SV (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
13s |
11s |
- |
- |
3.2 MB |
89% |
620.0 KB |
108.4 KB |
0 bytes |
116.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_SINGLE_TIDDIT:TIDDIT_SV (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
16m 9s |
4s |
13m 53s |
2m 12s |
15.5 GB |
494% |
143.7 GB |
11.8 GB |
0 bytes |
1.5 GB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MANTA:MANTA_TUMORONLY (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
11m 46s |
4s |
9m 33s |
2m 9s |
2.1 GB |
1548% |
296.6 GB |
157.3 MB |
112.3 GB |
148.3 MB |
4 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:CALCULATECONTAMINATION (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
12s |
2s |
8s |
2s |
583.1 MB |
214% |
97.1 MB |
696.4 KB |
0 bytes |
700.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:FILTERMUTECTCALLS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
3m 9s |
2s |
2m 58s |
9s |
704.2 MB |
109% |
8.3 GB |
8.3 MB |
0 bytes |
8.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GATHERPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
9s |
3s |
3s |
3s |
319.5 MB |
335% |
104.2 MB |
2.4 MB |
0 bytes |
2.4 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
9m 48s |
21s |
7m 16s |
2m 11s |
1.0 GB |
110% |
2.7 GB |
741.5 KB |
414.8 MB |
748.0 KB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
1h 16m |
22s |
1h 14m |
2m 11s |
1.5 GB |
109% |
20.9 GB |
1.3 MB |
20.7 GB |
1.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
1h 3m |
22s |
1h 0m |
2m 14s |
1.5 GB |
106% |
19.3 GB |
1.2 MB |
19.4 GB |
1.2 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:GETPILEUPSUMMARIES (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
1h 15m |
22s |
1h 13m |
2m 11s |
1.3 GB |
107% |
21.1 GB |
1.3 MB |
21.1 GB |
1.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:LEARNREADORIENTATIONMODEL (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
6m 14s |
2s |
6m 9s |
3s |
2.1 GB |
112% |
284.8 MB |
139.0 MB |
0 bytes |
139.0 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGE_MUTECT2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
8s |
2s |
3s |
3s |
247.1 MB |
309% |
102.5 MB |
7.6 MB |
0 bytes |
7.6 MB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MERGEMUTECTSTATS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
7s |
2s |
2s |
3s |
346.2 MB |
273% |
95.0 MB |
691.3 KB |
0 bytes |
696.0 KB |
1 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
4h 30m |
21s |
4h 27m |
2m 22s |
8.6 GB |
149% |
23.7 GB |
65.4 MB |
20.8 GB |
65.3 MB |
2 |
|
succeeded
|
NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)
|
4h 11m |
22s |
4h 9m |
2m 21s |
9.1 GB |
145% |
22.8 GB |
68.7 MB |
1.7 GB |
68.7 MB |
2 |