succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 4h 30m 21s 4h 27m 2m 22s 8.6 GB 149% 23.7 GB 65.4 MB 20.8 GB 65.3 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_MUTECT2:MUTECT2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 3h 41m 22s 3h 38m 2m 18s 6.2 GB 135% 22.1 GB 58.3 MB 19.9 GB 58.3 MB 2
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNFILTER (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 21s 2s 9s 9s 811.5 MB 4967% 2.1 GB 14.2 MB 0 bytes 35.6 MB 1
succeeded NFCORE_SAREK:SAREK:BAM_VARIANT_CALLING_TUMOR_ONLY_ALL:BAM_VARIANT_CALLING_TUMOR_ONLY_TNSEQ:SENTIEON_TNHAPLOTYPER2 (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 52m 1s 3s 49m 27s 2m 30s 6.7 GB 1187% 199.6 GB 169.7 MB 0 bytes 940.1 MB 2
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:CRAM_FILTER_HLA (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 2h 8m 6s 2h 6m 2m 13s 2.1 GB 132% 157.6 GB 99.2 GB 0 bytes 4.8 GB 4
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:FASTQ_HLATYPING_OPTITYPE:OPTITYPE (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 5h 6m 2s 5h 6m 4s 71.3 GB 108% 2.5 GB 429.9 MB 0 bytes 430.0 MB 2
succeeded NFCORE_SAREK:SAREK:CRAM_HLATYPING_ALL:HLA_CONVERT_OPTITYPE (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 11s 9s 0s 1s 15.7 MB 95% 1018.5 KB 2.1 KB 0 bytes 12.0 KB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:BCFTOOLS_MPILEUP (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 18m 28s 5s 16m 13s 2m 10s 634.3 MB 105% 66.4 GB 14.5 MB 0 bytes 1.5 MB 4
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:BAM_NGSCHECKMATE:NGSCHECKMATE_NCM (1) 35s 24s 1s 10s 5.5 MB 241% 13.8 MB 4.1 MB 0 bytes 4.1 MB 1
succeeded NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:MOSDEPTH (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 20m 29s 19s 16m 18s 3m 52s 2.7 GB 242% 60.9 GB 577.0 MB 60.9 GB 577.4 MB 4
aborted NFCORE_SAREK:SAREK:CRAM_SAMPLEQC:CRAM_QC_RECAL:SAMTOOLS_STATS (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 1h 46m 9s 1h 42m 3m 41s 293.4 MB 133% 63.6 GB 325.2 KB 63.2 GB 328.0 KB 4
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 1h 44m 3s 1h 38m 6m 12s 448.1 MB 217% 145.3 GB 93.8 GB 145.5 GB 93.9 GB 1
succeeded NFCORE_SAREK:SAREK:CRAM_TO_BAM_RECAL (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 1h 11m 4s 1h 5m 6m 27s 675.0 MB 223% 150.5 GB 89.9 GB 150.7 GB 90.0 GB 2
succeeded NFCORE_SAREK:SAREK:FASTP (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46-lane_1) 43m 10s 6s 37m 6s 5m 58s 8.6 GB 1462% 157.5 GB 135.5 GB 157.5 GB 135.5 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 26m 23s 1m 13s 24m 29s 40s 41.9 GB 1213% 27.4 GB 21.9 GB 0 bytes 4.7 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 29m 19s 10s 28m 36s 32s 42.1 GB 1237% 65.9 GB 59.6 GB 0 bytes 13.0 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 29m 37s 9s 28m 55s 33s 42.0 GB 1238% 65.9 GB 59.6 GB 0 bytes 13.0 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 29m 40s 10s 28m 58s 31s 42.1 GB 1235% 65.9 GB 59.6 GB 0 bytes 13.0 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 29m 37s 11s 28m 51s 34s 42.0 GB 1238% 65.9 GB 59.6 GB 0 bytes 13.0 GB 1
succeeded NFCORE_SAREK:SAREK:FASTQ_ALIGN_BWAMEM_MEM2_DRAGMAP_SENTIEON:SENTIEON_BWAMEM (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) 30m 18s 8s 29m 34s 35s 42.1 GB 1235% 65.9 GB 59.6 GB 0 bytes 13.0 GB 1
152 items found |
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