NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46) - mipeters-sarek-B23FC2GLT4_largest_sample-2026-01-26_16-36-43z - Workflow Tracker

Runs
mipeters-sar..6_16-36-43z
Tasks
GATK4_APPLYBQSR (p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46)

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Task Info

Status: succeeded
Hash: c3f2aef48bd9
Process: NFCORE_SAREK:SAREK:BAM_APPLYBQSR:GATK4_APPLYBQSR
Tag: p_tis_gDNA_exp3_gDNA_0001_23FC2GLT4_s46
Attempts: 4

Attempt 4

Execution

Status: succeeded
Hash: 58/a0ad54
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/a0ad5448aa20fa22a8959a17e1939f
Native ID: nf-58a0ad5448aa20fa22a8959a17e1939f-970a0

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.0 / 12
Memory (peak / alloc): 3.2 GB / 72.0 GB
Process I/O (rchar / wchar): 15.4 GB / 40.2 GB
Disk I/O (read / write): 291.8 MB / 40.2 GB
Host: i-0115491c3a3c79159 ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:30:10 PM
Completed: Jan 26, 2026 6:34:50 PM
Total Duration: 6h 4m

Phases

Queue: 1m 2s
Execution: 5h 59m
Stage/Unstage: 4m 24s

Attempt 3

Execution

Status: failed
Hash: bf/e889ca
Exit Code: 137
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/e889caefdfa5a20bf92be86d971fc9
Native ID: nf-bfe889caefdfa5a20bf92be86d971fc9-df63e

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-0e7c4f6d9b0696f0a ( on-demand)

Runtime

Submitted: Jan 26, 2026 12:27:31 PM
Completed: Jan 26, 2026 12:30:10 PM
Total Duration: 2m 39s

Phases

Queue: 19s
Execution: 2m 19s
Stage/Unstage: 0s

Attempt 2

Execution

Status: succeeded
Hash: b8/c4072a
Exit Code: -
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b8/c4072ac0624a8a6b9315de802fa91c
Native ID: nf-b8c4072ac0624a8a6b9315de802fa91c-4eadc

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): 1.1 / 12
Memory (peak / alloc): 2.2 GB / 72.0 GB
Process I/O (rchar / wchar): 15.4 GB / 40.2 GB
Disk I/O (read / write): 163.5 MB / 40.2 GB
Host: i-096914bef70df7a23 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:10:53 PM
Completed: Jan 23, 2026 8:10:21 PM
Total Duration: 2h 59m

Phases

Queue: 4s
Execution: 2h 55m
Stage/Unstage: 4m 4s

Attempt 1

Execution

Status: failed
Hash: f3/11c911
Exit Code: 143
Container: 292967571998.dkr.ecr.us-west-2.amazonaws.com/quay/biocontainers/gatk4:4.5.0.0--py36hdfd78af_0
Work Directory: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/11c911fa88a0ccb5611678f92a3afc
Native ID: nf-f311c911fa88a0ccb5611678f92a3afc-9ee0d

View Metrics and Logs in Datadog View Workdir

Resources

CPU (used / alloc): - / 6
Memory (peak / alloc): - / 36.0 GB
Process I/O (rchar / wchar): - / -
Disk I/O (read / write): - / -
Host: i-096914bef70df7a23 ( on-demand)

Runtime

Submitted: Jan 23, 2026 5:07:04 PM
Completed: Jan 23, 2026 5:10:48 PM
Total Duration: 3m 43s

Phases

Queue: 2s
Execution: 3m 41s
Stage/Unstage: 0s