File Info
- Filename
- 1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32.mutect2.filtered.vcf.gz.filteringStats.tsv
- Full Path
- s3://natera-rnd-pltf-dev-nextflow-data-01/users/mipeters/semiproductionize/sarek/cgp_abtest_largest_tn_pair_from_sentieon_dedup/binpacking-14/variant_calling/mutect2/1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32/1029_BICA-T1-TDNA-1_ABtest_SSF_signatera_tissue_33_vs_1029_BICA-N1-BDNA-1_ABtest_SSF_signatera_blood_32.mutect2.filtered.vcf.gz.filteringStats.tsv
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- 1.9 KB
- Workflow Run
- mipeters-sarek-binpacking-14
- Published
- Jan 28, 2026 12:54 PM
Content
View in new tab| #<METADATA>Ln | prior | of | deletion | of | length | 10=-16.87926530577777 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 9=-17.524804331528625 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 8=-17.017648777118584 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 7=-17.18194535819092 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 6=-15.9068801996624 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 5=-16.093301489781965 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 4=-14.934755714155491 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 3=-15.288157418026204 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 2=-13.889144670938176 | ||||
| #<METADATA>Ln | prior | of | deletion | of | length | 1=-13.342768299031617 | ||||
| #<METADATA>Ln | prior | of | SNV=-7.718934011519696 | |||||||
| #<METADATA>Ln | prior | of | insertion | of | length | 1=-13.022584608829106 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 2=-13.687647033637756 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 3=-14.202310294953762 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 4=-13.625282245258527 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 5=-14.834198915137979 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 6=-15.606492898582642 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 7=-16.098866678732815 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 8=-15.720469154372234 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 9=-16.62651848331948 | ||||
| #<METADATA>Ln | prior | of | insertion | of | length | 10=-17.117663820450872 | ||||
| #<METADATA>Background | beta-binomial | cluster=weight | = | 0.7464, | alpha | = | 1.00, | beta | = | 2.57 |
| #<METADATA>High-AF | beta-binomial | cluster=weight | = | 0.0000, | alpha | = | 9.73, | beta | = | 2.33 |
| #<METADATA>Binomial | cluster=weight | = | 0.2536, | mean | = | 0.345 | ||||
| #<METADATA>threshold=0.529 | ||||||||||
| #<METADATA>fdr=0.077 | ||||||||||
| #<METADATA>sensitivity=0.961 | ||||||||||
| filter | FP | FDR | FN | FNR | ||||||
| weak_evidence | 3423.02 | 0.02 | 1776.59 | 0.01 | ||||||
| strand_bias | 7676.16 | 0.04 | 2522.1 | 0.01 | ||||||
| contamination | 1750.13 | 0.01 | 700.65 | 0.0 | ||||||
| normal_artifact | 189.96 | 0.0 | 119.25 | 0.0 | ||||||
| orientation | 3058.4 | 0.01 | 133.8 | 0.0 | ||||||
| slippage | 0.07 | 0.0 | 0.37 | 0.0 | ||||||
| haplotype | 4827.0 | 0.02 | 1129.59 | 0.01 | ||||||
| germline | 116.89 | 0.0 | 55.78 | 0.0 |
36 rows